BAC Information

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BAC

Clone NameMSMg01-142C02
Chromosome9 (Build37)
Map Location 24,562,572 - 24,563,222
singlet/doubletsinglet
Overlap geneTbx20
Upstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4
Downstream geneLOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142C02.T7 (MSMg01no142_c02.b1)MSMg01-142C02.TJ (MSMg01no142_c02.g1)
ACCAG346820AG346821
length1,2251,170
length of high quality
(start - end)		776 (90 - 865)653 (89 - 741)
definitionCHROMAT_FILE: MSMg01no142_c02.b1 PHD_FILE: MSMg01no142_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:24 2005CHROMAT_FILE: MSMg01no142_c02.g1 PHD_FILE: MSMg01no142_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCAAATTTNNNNNNATGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAATAAAAATGAAGGCACCCTATAACCAAACTCATGA
GATACATTGAAAGCAGTGCTAACCGTAATGTTCATAGCACTAACCGCCTT
CATAAAGAAATTGGAGCGCTCTAATCCCAGCAAGTTAACAGCACATCTGA
AAGCACTAGAACAAAAAGAAGCAAGCTTACCCAAGTGGAGGACATGGCAG
GAATAATCAAACAGAGGCTGAAAACAATAAAAGAGAAACACATAGAATCA
ATGAAACAAAGAGTTGATGCTTCAAGAAAATCAACAAGATAGTCAAACCC
TTATCCAAAGTAACTGAAAGACAGGAAAGAATTAACAAAATCAGAAAAGT
AAAGGGGCCATAACAACACAAACAAACGAAATCCAAATAATCATTAGTTC
ATACTTTAAAAACCCATATTCTATAAAATTGGAAAATAGTAAAAGGAATA
GAAATTTTTCTCAATAGATTCCACTTACTAAAATTAAATCAATATCAGAC
AAACATTTAAACAGATTTATACCTGAAAAGAAATAGAAGTAGTAACTAAA
AAAATCTCCCAACCCAAAACAGCCCAGGACCAGCTACTTTTAGCACAGAA
TTCTCTTGAGAATTTCGAAGAAAAGCTAACACCAATATTCCTCAATTTAT
TCCACTCTGCAGAAATAGAAGGAGCATTGGCTAATTCATTTTATGAGGCC
ATAGCCATCTTGATAACAAAACCACACAGACATCCAACAAAGAAAGGGCA
TTAACAGACCAGTTTCTCTCCAAAACATTGATTCAAAATACCCAATAAAA
TATTCATAAATTGAATCTAAGAAGACATTTTTTAAAAAGTAGGCTTCATC
CCAGACATGTAGGGATGGTTCAACATAGGAAAATATGTCAGAGAAGTCTA
CCATATAAATTAACTTAAAAAAATTGATCAACTCATTAGATGCTGGAAAA
GCCATTGACAAAGTCCATACCCCCTTCTTGAAAAATCTCCAAAAGAACAA
GGGATAAAGGAAACTTACCCTAAATTATTTAAGGCTGATGAACCCCCCAG
GGGAAACCACGCCCGGTTAAAGATTTGTTTGGAAAAAAACTTGAAACCTT
TTGAAAAGAAACCCCAAAAATAAAAAAAACCTCCCCCCCCATAGGAACAG
AAAAGGGGAAAATAAAAAAAAAAGG

NCATTTATNNNNNNAAGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTAGAGTTCATCTTTCCAG
AGACAGTTTTCACAGCAGTCACAGCCTACCAGAACCAACCCGCCCGAGTG
GCCCTTGACAGTTCAGTTCCCACACAAGGGTTTTCCAGCACTCAAAACAG
AAGCTGCTCTGGAGGAAGACAGCTCATAAACATGAGCCTCTAAGAATGTA
CTGAGCATCAGCCATCTTCCAGGACCCTCATTCTATAGTGCAGGCTGCTT
GCTGGCTGATCCTAACCTGAATCCACCCCAGAGTGCCTTCTGCAGGCACC
CTGGAGACACTTGTTTAAATTACCAACCCTTGAGACTCTTCTTGAAACTA
GCTTAGCCACAGCTTATGATAAGGGAAACGATGTGAATGTCTCTGTAAAT
AATAAGCTGCAGTCCTGTATTTAATTGACATCAAAATATCCAGTTATAAT
GTCAGGTTATACCTTTCTATTACTCTTTGTCACACTCGGTATTTCCAACT
TGAGCACTGTTTTCTTGCATGAATGAGATTTAGTCTTAGTAAACATGTAT
CAATGTTCCACTGAGGCCAAGTGCTGATAGGCATTTGCTTGAACATTTTC
TTCTTTCTTGGTTGGCAGAAAGTTGTCATGTTTATAGCAACAGTGATGCA
AAATGGGGAGGAAGCTGAGGGCAAGAAGGAAAGACTGGGTAATTTTTCTG
AAGTCAAAAAAGCGGGAAGTAGAGTTCTTTTGGAGTGTATGTAGTAAACG
GTGTTCACACCTTTAGTTTAATCCACAGCTAAGTTGCTCAGAACTCTTCA
CCTTGCTTTTGTTTGAATGCTTGTAATTAATAGCTAGTATGCTTGCCTTC
CCCTTTCCTTGCATTTCTTTTTGCTCTTCCTTCTCTACACGATCAGTCGT
CGCCCTCTGTCCTACTTCTTTATTCGCTGCTTTTCTCCATCCCCAAATTT
CCTATCTTCCCTTATTTCTTTCTTTCCTTCACTTCTTTTCTCCTATTTAT
ATATTCTACTCCCTCTCTCCTTCCCCTTCCTTCTCCTCCTTCTCCCTTTC
TTTCTCCCTTCCTCTCTTTCTCGCTTTTTACATCTCTCCTTCCTCTTCCT
CTTCTCATATCTTCTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_c02.g1 MSMg01no142_c02.g1 CHROMAT_FILE:
MSMg01no142_c02.g1 PHD_FILE: MSMg01no142_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:24 2005
         (653 letters)



>mm_chr9_24562372_24563422
          Length = 1051

 Score = 1151 bits (595), Expect = 0.0
 Identities = 638/653 (97%), Gaps = 2/653 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatctttccagagacagttttcacagcagtcacagcctaccagaaccaacccgcccgag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |   |||
Sbjct: 851 tcatctttccagagacagttttcacagcagtcacagcctaccagaaccaactgg--tgag 794

                                                                       
Query: 61  tggcccttgacagttcagttcccacacaagggttttccagcactcaaaacagaagctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tggcccttgacagttcagttcccacacaagggttttccagcactcaaaacagaagctgct 734

                                                                       
Query: 121 ctggaggaagacagctcataaacatgagcctctaagaatgtactgagcatcagccatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ctggaggaagacagctcataaacatgagcctctaagaatgtactgagcatcagccatctt 674

                                                                       
Query: 181 ccaggaccctcattctatagtgcaggctgcttgctggctgatcctaacctgaatccaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ccaggaccctcattctatagtgcaggctgcttgctggctgatcctaacctgaatccaccc 614

                                                                       
Query: 241 cagagtgccttctgcaggcaccctggagacacttgtttaaattaccaacccttgagactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cagagtgccttctgcaggcaccctggagacacttgtttaaattaccaacccttgagactc 554

                                                                       
Query: 301 ttcttgaaactagcttagccacagcttatgataagggaaacgatgtgaatgtctctgtaa 360
           |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 553 ttcttgaaactagcttagccacagcttaggataagggaaacggtgtgaatgtctctgtaa 494

                                                                       
Query: 361 ataataagctgcagtcctgtatttaattgacatcaaaatatccagttataatgtcaggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ataataagctgcagtcctgtatttaattgacatcaaaatatccagttataatgtcaggtt 434

                                                                       
Query: 421 atacctttctattactctttgtcacactcggtatttccaacttgagcactgttttcttgc 480
           ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 433 atacctttctactactctctgtcacactcagtatttccaacttgagcactgttttcttgc 374

                                                                       
Query: 481 atgaatgagatttagtcttagtaaacatgtatcaatgttccactgaggccaagtgctgat 540
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 373 atgaatgagatttagtcttagtaaacacgtatcaatgttccactgaggccaagtgctgat 314

                                                                       
Query: 541 aggcatttgcttgaacattttcttctttcttggttggcagaaagttgtcatgtttatagc 600
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aggcgtttgcttgaatattttcttctttcttggttggcagaaagttgtcatgtttatagc 254

                                                                
Query: 601 aacagtgatgcaaaatggggaggaagctgagggcaagaaggaaagactgggta 653
           ||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 253 aacagtgatgcaatatggggaggaagctgaggggaagaaggaaagactgggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1051
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1041
Effective search space:   669363
Effective search space used:   669363
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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