BAC Information

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BAC

Clone NameMSMg01-142I04
Chromosome9 (Build37)
Map Location 111,756,513 - 111,757,178
singlet/doubletsinglet
Overlap genenone
Upstream gene1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
Downstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142I04.T7 (MSMg01no142_i04.b1)MSMg01-142I04.TJ (MSMg01no142_i04.g1)
ACCAG347102AG347103
length1,2191,234
length of high quality
(start - end)
696 (131 - 826)677 (143 - 819)
definitionCHROMAT_FILE: MSMg01no142_i04.b1 PHD_FILE: MSMg01no142_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:16 2005CHROMAT_FILE: MSMg01no142_i04.g1 PHD_FILE: MSMg01no142_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:17 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNCATATCNNNNNNGAGCAGTGGGCGCTATAGACTCCTATGGGAGAGGAT
CCGCGGAATTCTCCTTTTCATGAGTCCCTGTAAAGTCCCTGCTCACGTGA
CAGGAAGGGTTTATTAACCCTATGAGTACATGAATGACCCCATGTCAGCG
TTGGAGAGGTACATAGAAAGTGAATGAAAAACATTCTTCAGAGGAAGAAA
AAGCAGGCCCAGGATTGCCACAAATGGATTTGTATTAAACTGCCTTCAAA
TGGCTTATCTTTATATCTACAGATTAGTGCATCTCATTCTGCTCATCAAA
GGTGCTTCTATTTGCAGTAGGTGGTGATTAACATAGAGATTCACAACTAG
TCACAGTGAATACATGAACAAGAGACGGTAGAATTCTCAGCCTTCACTAG
GACATATATATCTTTTCACCCCAACCCACCCCCCATTTCAAGGCTCAGAG
ATCACTGTGGAAGAGAGGGCAGAAAAACTGTAAGATCCAGTGGCTGTAGA
TGACCATCAGGACACAGCGGGGTTTTACACATATGAACTCATAGTGCTTG
TAACAGCATGCACAAGACTGGTGCTAACTCAGGTCAGACAAAATCCCAGC
ATGGGGAGGGGAGGTCTGTACAAAGTCCAACCCCTGATGGAGGAACTATT
GGCCATTAGTAGTTTCTGGGAGAGAAAGAGTCAGCTCTGTTTAAAGAGAG
TCACCTCTAGTTGGCCAAAGGCACTCCTGTGAAAGGCCACACATCCAAGC
GTATATAAACAACACAAATTGGAGCTGATGGGTTAAGAAGAGAGAACAGA
ATACCGGGTGGGTAGCAAAGTAAGCGGATCTGAGAAAAGCTGTGAAGGAG
TAAGTGTGATCAAAAACGTGTGTGGGATGGTCAGACAACTAATAAACCCG
AAGAAAGGTCAACAAAGCTTTATTTCAGATAGATGGATTCCTGGTCTAAA
CCCAAGTTCTGTGTAAGCATGAGCCCCCCGTCTTTTTTTGTGGTTCAGTA
TTTTCGTTATTGTGCCCCCCCTATTTTGATATTTTGATTTTTTATCATTG
TTTTTTTTTTCCCGATTTCATTTTCATTAATTGTTTTGTTAATAATCTTT
CTAATTTTTTTTTCCCTAAATATTTTTTTTTCAATTTATTTTCGGTCTCC
AAGGTAAATTCTTTATTTTCACGTCCTACCATATTTTCCTCTACTGTTTT
GTATNCCCTCTTATCTATT
NCAAATATNNNNNNAAACATGCGTAGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAAACCGCCAGGGCTAT
TCAGAGAAACCCTGTCTCACCATAAAAACAACAACAACCCCCAAAGAATA
ATGAAGAAAAATTAAGGTTGGGTGTCAATCTCAGATCTCCATATACCTGC
CACTCACATTTGCATTCACACATGAGCCCTCACACATGTAAACACACATA
CAAGTGGACACTGCACACACAGACACATGCAAAGAAACAAACACAAACTG
TCAATGAGTATCACTAAGGGACGTGTCAGCCTGGAGGGCTGGGAAGATAA
GTGGGTTCAGGTTGAACTCCAAGAGAAGGATATGGGCACCATCCCTTCTG
AGTGGAATAGCATATAAAGCCCATGTGATGCTGGAGATCAGAGTGAGCTC
TGAACAATGAGGATGGGAGAAATGTATACACTACCACAAAGAACCAAAAG
TCAAAACAAGATAGGTTTCAGAAGTGGTAGCAGTGCCCCCAAAAGATGAC
TCTCAATGATGCAAACCTCATTCCAGCTGCCCAGAAGTAGCTGGTATATG
CATGGCCAGTGGGAAATGGACATCAGAGGTTGTCACTGAGCATGCTTCTG
CAAGGGAAGTCATCAGATTTCATTGCCAATGAAGAAGCTCTGGGCACGTT
TTCATCTTCATCTCTTCTCCCCATTCACCAACCATTCCCTACTGTGTGTC
TTCATGCCTCGATGGCTCGCTTGATTAAACTCTACTCATATGGCACACAT
GGGACCAGGTCTTGACAGTGACTCCAGATGAGGGAATGCTTAAAATACTA
CAAGGCTGGCATCCACATGGGTGAAAATCCGCAGAGGATTTTGTTGTTTT
GTACAATAAGTGGAAGTATGATCCAACCCCTTGCACTGATTTTAAGAATT
CCTTCCTTGCATCTTCCTTTGCGTTCAACAAAAAAACCCTTTTTTCAATT
TTTAAGTATTGTACCTGTTTCCATTACCCTTTAAATTCCCCTTCCCCAAT
TGAAATAATTCCCTCTTTTGGTAAATTTTTTTTCTTTTTGCATAAACCCT
TTAAAATGTCCTTATTCTAATCATTTTCCTTTTAAATTATAATATTTTTT
TCTTTATTAATCTCATATTTCTGCACATCACTTGTATATTTTCTTCTCCT
ACTCTCTTTACTCTTATATCTTCTTTTACTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_i04.g1 MSMg01no142_i04.g1 CHROMAT_FILE:
MSMg01no142_i04.g1 PHD_FILE: MSMg01no142_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:17 2005
         (677 letters)



>mm_chr9_111756157_111757233
          Length = 1077

 Score = 1036 bits (536), Expect = 0.0
 Identities = 635/668 (95%), Gaps = 4/668 (0%)
 Strand = Plus / Minus

                                                                        
Query: 12   aagaaaaattaaggttgggtgtcaatctcagatctccatatacctgccactcacatttgc 71
            |||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 1022 aagagaaattaaggttgggtgtcagtctcagatctccatatacttgccactcacatttgc 963

                                                                        
Query: 72   attcacacatgagccctcacacatgtaaacacacatacaagtggacactgcacacacaga 131
             ||||||||||||||| ||||||| ||||||||||||||||  |||||| || |||||||
Sbjct: 962  tttcacacatgagcccccacacatctaaacacacatacaagacgacactacatacacaga 903

                                                                        
Query: 132  cacatgcaaagaaacaaacacaaactgtcaatgagtatcactaagggacgtgtcagcctg 191
            |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 902  cacatgcaaagaaacaaacaaaaactgtcaatgagtatcactaaggggcgtgtcagcctg 843

                                                                        
Query: 192  gagggctgggaagataagtgggttcaggttgaactccaagagaaggatatgggcaccatc 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 842  gagggctgggaagataagtgggttcaggttgaactccaagagaaggatatgagcaccatc 783

                                                                        
Query: 252  ccttctgagtggaatagcatataaagcccatgtgatgctggagatcagagtgagctctga 311
            ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 782  ccttctgagtggagtagcatagaaagcctatgtgatgctggagatcagagtgagctctga 723

                                                                        
Query: 312  acaatgaggatgggagaaatgtatacactaccacaaagaaccaaaagtcaaaacaagata 371
            ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 722  acaatgaggatgggagaaatgtatacactaccacaaagaaccaaaggccaaaacaagata 663

                                                                        
Query: 372  ggtttcagaagtggtagcagtgcccccaaaagatgactctc-aatgatgcaaacctcatt 430
            ||||||||||||||| | |||||||| |||||||||||||| ||||||| ||||||||||
Sbjct: 662  ggtttcagaagtggtggtagtgcccc-aaaagatgactctccaatgatgtaaacctcatt 604

                                                                        
Query: 431  ccagctgcccagaagtagctggtatatgcatggccagtgggaaatggacatcagaggttg 490
            ||||||||| |||||| |||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 603  ccagctgcctagaagtggctggtatattcatggccagtgggaaatggacagcagaggttg 544

                                                                        
Query: 491  tcactgagcatgcttctgcaagggaagtcatcagatttcattgccaatgaagaagctctg 550
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543  tcactgagtatgcttctgcaagggaagtcatcagatttcattgccaatgaagaagctctg 484

                                                                        
Query: 551  ggcacgttttcatcttcatctcttctccccat-tcaccaaccattccctactgtgtgtct 609
             ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 483  tgcacgttttcatcttcatctcttctcctc-tctcaccaaccattccctactgtgtgtct 425

                                                                        
Query: 610  tcatgcctcgatggctcgcttgattaaactctactcatatggcacacatgggaccaggtc 669
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 424  tcatgcctcgatggctcgcttgattaaactctactcatctggcacacatgggaccaggtc 365

                    
Query: 670  ttgacagt 677
            ||||||||
Sbjct: 364  ttgacagt 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)