Query= MSMg01no143_f08.b1 MSMg01no143_f08.b1 CHROMAT_FILE:
MSMg01no143_f08.b1 PHD_FILE: MSMg01no143_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:52 2005
(672 letters)
>mm_chr9_73951624_73952693
Length = 1070
Score = 1243 bits (643), Expect = 0.0
Identities = 662/669 (98%), Gaps = 2/669 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaagaatagccaggtagatgatctatgaattccagcttgctaaataactataaa 63
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ggaattcaagaaaagtcaggtagatgatctatgaattccagcttgctaaataactataaa 811
Query: 64 taaacgacacaatctttgaacagaagatcattttgctagcaagggaatcctttgtgaagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 taaacgacacaatctttgaacagaagatcattttgctagcaagggaatcctttgtgaagt 751
Query: 124 gcaagccacatgcacacaggagatgtgaaaacgactgacataattcggtccctacagaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gcaagccacatgcacacaggagatgtgaaaacgactgacataattcggtccctacagaag 691
Query: 184 tgtggagagtcatggagtttctcctctaactctgtctccattgttcccttctttctgcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgtggagagtcatggagtttctcctctaactctgtctccattgttcccttctttctgcct 631
Query: 244 ccccctttaaaaaataggagtcagtagacgctgtaagagcgggatctgccttctgcagaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ccccctttaaaaaataggagtcagtagacgctgtaagagcgggatctgccttctgcagaa 571
Query: 304 ctacacccatgcctggaaggaggtgaccctttcttcatgatcctcttacctcagtcttct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ctacacccatgcctggaaggaggtgaccctttcttcatgatcctcttacctcagtcttct 511
Query: 364 gagtagctacaatatttgatgttttgataaacaccgatttctaaaaaccatttgggaggt 423
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 510 gagtagctagaatatttgatgttttgataaacaccgatttctaaaaaccatttgagaggt 451
Query: 424 gtgaaataatttaactctttggggctacacatgtgagcaaatgtgaatatttcttaattg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gtgaaataatttaactctttggggctacacatgtgagcaaatgtgaatatttcttaattg 391
Query: 484 acagggagattgaagaaccttgaatggccgtctaaagaagttataagcctgtgtaagtca 543
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 390 acagggagattgaagaaccttgaatggccatctaaagaagttataagcctgtgtaagtca 331
Query: 544 gacttttaaaaatgatggtaggttcttgactatagaagagccatggaacagcagccctat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gacttttaaaaatgatggtaggttcttgactatagaagagccatggaacagcagccctat 271
Query: 604 aatgtaatattttaggcaaaaaaaataatatttagacacactgtctttctagtactagat 663
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 270 aatgtaatattttaggcaaaaaaa--aatatttagacacactgtctttctagtactagat 213
Query: 664 ttcaagatc 672
|||||||||
Sbjct: 212 ttcaagatc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1070
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1060
Effective search space: 701720
Effective search space used: 701720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_f08.g1 MSMg01no143_f08.g1 CHROMAT_FILE:
MSMg01no143_f08.g1 PHD_FILE: MSMg01no143_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:52 2005
(527 letters)
>mm_chr9_73796878_73797804
Length = 927
Score = 905 bits (468), Expect = 0.0
Identities = 515/536 (96%), Gaps = 12/536 (2%)
Strand = Plus / Plus
Query: 1 cctggaactagcattacaggtgattatgacctgccatatggatgctgagaaccaaaccca 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cctggaactagcgttacaggtgattatgacctgccatatggatgctgagaaccaaaccca 252
Query: 61 gatcccctgcaaaagcagcaagtattccattga--------gccaatctccagacaactg 112
|||||||||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 253 gatcccctgcaaaagcggcaagtactccattgagccattgtgccaatctccagacaactg 312
Query: 113 actttaccttagtcacagtccactgaaattagggttatagtgaatccccatagcaacaca 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 actttaccttagtcacagtccactgaaattagggttatagtgaatccccatagcaacaca 372
Query: 173 gcatggaaa-tctctacttccctctacaatagtattctgagagtgaagaccttagactaa 231
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gcatg-aaagtctctacttccctctacaatagtattctgagagtgaagaccttagactaa 431
Query: 232 atgttatggtcactttaaaacaattttcctggctggggagatgctcagccagtaaagtgc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atgttatggtcactttaaaacaattttcctggctggggagatgctcagccagtaaagtgc 491
Query: 292 tttctgtgcaagcatgagtttggatctacaaaaacccacggggggaaaagccaggggcag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tttctgtgcaagcatgagtttggatctacaaaaacccacggggggaaaagccaggggcag 551
Query: 352 tgcatgttcttgtagttccaaagctaaaatgatggagaaaagaggactctcttcctgggg 411
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 552 tgcatgttcttgtagttccaaagctaaagtgatggagaaaagaggactctcttcctgggg 611
Query: 412 cttactggccagaaagcctaacaaaattgctgagttctgggtaaacgggagagatcatgt 471
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 612 cttactggccagaaagcctaacaaaattgctgagttctgggtaaaagggagagatcatgt 671
Query: 472 tttaaacaacatgattcaagttcattcaaggctgaactctgacctctccagacagg 527
|||||||||||||||| || ||||||| ||||||||||||||||||||| ||||
Sbjct: 672 tttaaacaacatgattgaaa--cattcaatgctgaactctgacctctccaggcagg 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
