BAC Information

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BAC

Clone NameMSMg01-143O03
Chromosome9 (Build37)
Map Location 50,625,192 - 50,625,441
singlet/doubletsinglet
Overlap geneAlg9
Upstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik
Downstream genePpp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143O03.T7 (MSMg01no143_o03.b1)MSMg01-143O03.TJ (MSMg01no143_o03.g1)
ACCAG348109AG348110
length706705
length of high quality
(start - end)
250 (80 - 329)207 (70 - 276)
definitionCHROMAT_FILE: MSMg01no143_o03.b1 PHD_FILE: MSMg01no143_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:33 2005CHROMAT_FILE: MSMg01no143_o03.g1 PHD_FILE: MSMg01no143_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGGGACTCCCGAGAGGGTATGAGAGAGAGAGCCAGGAGAGGGTCT
TGCAGAGGCTGCTGCCCCGCTGCTGCTGGTCCCTGCTATTGCTGGTCCCT
GCTGTTGTGTTTTCTGCTTTTGCTATTGCTGGTTTTCTGGATTGCTAGAT
GTATCTCCTGATGATGAGACTGGACTTGCCCCTAGTAACTTGACACCTCT
AGTCAGCAGGAAGTAGTCTAAAGAGATCTATGCCCCCTTTCCCCTCTAAC
ATTCATTTTCTCTCTCGCTTACCTAATGTTGGGTGGTTAGAATGGTTCCC
GTTGTAAATTGTACCCGATATTAGAATCCCACTAATTATTCTGAAATGTC
CTGTTACCTATGCCCCCCCCCCCCACTGAACCATTTCTCTCACATTTATT
GTTGTTTACATTAACTATTACCACTTCCTCTTTTAAAGGTCCAATTGTAT
TCTGCCTATATGTCTGCAAACCTTTATATTTCTAGACTTTATTATTCCCT
TGTTTTCTCTCCACCCTCTTATTTTTTTTTTTCCCCCCCTATTTTCATCA
GCCCTACTCCCTTCTACTATATCTGTTCTGCCCCTCTTGCCCTTTACTTC
CCCCCACCATTTATCTCCTCCATCCTTTTATTCTCCTAATTCTTCTTTCC
ATTTTC
CATGAATGGGTAGGCTGGCGGCGCCTGTTTTCAAXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTGTGTATCCTAGGCTGGACTCAAACTCAG
AAAGATCTATCTGCTTCTGCCTCCTACAGCATTTTGCTCTGATAAAGTTA
TTTTTATTTTTAATGTCTCTGCGTGGCCTTGTGCATGTGACTTCAGTGCC
CACAGACACTAGAAGAGGGTGTTGGATAGCCTAGAGATGGAATTAATCCA
GTCACTGTCTGACGTGGGTGCTGGGACACAAACTCAGGTATTCTGTAAGA
GCGCTACACACTCTTAGCAGCCAAGCCATCTTTCCTGTGTGCGCCTGTGT
GTGTGCGCGTGCGCGTGTGTGTATTTAAAATTTTATTCATTTATTATTGA
ATTTCTCACACCCCCCTTTTTTTTTTTATCCCTGTTTATTTCTACCTCTT
CACTTCTTTTCCTCTCTTTTTTTTCTTTCTCCCCCCTTCTCTACTACTAT
ATATACATCCCAATCTACATCCTCTCTAAAACAACATATTCCCTTTTCTT
CTTACTTTTTTTTCTTTTTATACTCCTTCCCCGCATCCCTTTATTTTTTT
TTCTTTTCTTCCCTTTTTTCCTTCATTTTATCTAACACATTTAACTATCC
CTTCTTACATTCCTATCTATTTACACATATATAAACCATCCTCCATAACT
TCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_o03.b1 MSMg01no143_o03.b1 CHROMAT_FILE:
MSMg01no143_o03.b1 PHD_FILE: MSMg01no143_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:33 2005
         (250 letters)



>mm_chr9_50625119_50625768
          Length = 650

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagagagccaggagagggtcttgcagaggctgctgccccgctgctgctggtccctgctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagagagccaggagagggtcttgcagaggctgctgccccgctgctgctggtccctgctat 264

                                                                       
Query: 61  tgctggtccctgctgttgtgttttctgcttttgctattgctggttttctggattgctaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgctggtccctgctgttgtgttttctgcttttgctattgctggttttctggattgctaga 204

                                                                       
Query: 121 tgtatctcctgatgatgagactggacttgcccctagtaacttgacacctctagtcagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgtatctcctgatgatgagactggacttgcccctagtaacttgacacctctagtcagcag 144

                                                                       
Query: 181 gaagtagtctaaagagatctatgccccctttcccctctaacattcattttctctctcgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gaagtagtctaaagagatctatgccccctttcccctctaacattcattttctctctcgct 84

                     
Query: 241 tacctaatgt 250
           ||||||||||
Sbjct: 83  tacctaatgt 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)