Query= MSMg01no144_n20.b1 MSMg01no144_n20.b1 CHROMAT_FILE:
MSMg01no144_n20.b1 PHD_FILE: MSMg01no144_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:48 2005
(647 letters)
>mm_chr9_32357929_32358972
Length = 1044
Score = 1125 bits (582), Expect = 0.0
Identities = 628/649 (96%), Gaps = 13/649 (2%)
Strand = Plus / Plus
Query: 4 gaattccatatcaggttacacg-atactttatctgcccagatctgcccgcgtggggggct 62
||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccatatcaggagaaa-gcatactttatctgcccagatctgcccgcgtggggggct 262
Query: 63 ctgctcaagactggagggcgttattcattatttccttctcaacaatatcccgattttctc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctgctcaagactggagggcgttattcattatttccttctcaacaatatcccgattttctc 322
Query: 123 tcccgtccctcccccaaagcgccacatattgaaacattttgctccttaataagagcagac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcccgtccctcccccaaagcgccacatattgaaacattttgctccttaataagagcagac 382
Query: 183 ccaagagctagaaggtgaaaggccaggctgggactggtgactggagcagcccgggatcct 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 ccaagagctagaaggtgaaaggccaggctgggactggtgactggagcagcccgggatctt 442
Query: 243 tgcccacaaccacgttgcccctccctacacattcctgactgtagcttaggaaaacaagac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgcccacaaccacgttgcccctccctacacattcctgactgtagcttaggaaaacaagac 502
Query: 303 ctcagaggaagggagggggctaacagtccggagccagggtccctggaattctgctcttag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctcagaggaagggagggggctaacagtccggagccagggtccctggaattctgctcttag 562
Query: 363 gattcttggcccc----acgccttctttcccaaagggacagcatactatttcaaacaatg 418
||||||||| | | | |||||||||||||||||||||||||||||||||||||
Sbjct: 563 gattcttgg----ggagatgtcgtctttcccaaagggacagcatactatttcaaacaatg 618
Query: 419 gtcaatagaaattactgtctacatgtacatcccgtgttcttaaagataagctttctttag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtcaatagaaattactgtctacatgtacatcccgtgttcttaaagataagctttctttag 678
Query: 479 gaaagtagagaggtctgaagggcttcaggtattctagaggaaatgagagccaaacaaatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaaagtagagaggtctgaagggcttcaggtattctagaggaaatgagagccaaacaaatt 738
Query: 539 gtttagtgccttaccatccctggtcggtcccccccaacccccaaccccagccctccgtct 598
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 739 gtttagtgccttaccatccctggtcggtccccccc---ccccaaccccagccctccgtct 795
Query: 599 tccgncttcctatttatttatctatttctatatttttcaggattgatag 647
|||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tccgtcttcctatttatttatctatttctatatttttcaggattgatag 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1044
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1034
Effective search space: 658658
Effective search space used: 658658
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_n20.g1 MSMg01no144_n20.g1 CHROMAT_FILE:
MSMg01no144_n20.g1 PHD_FILE: MSMg01no144_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:48 2005
(644 letters)
>mm_chr9_32517031_32518074
Length = 1044
Score = 1176 bits (608), Expect = 0.0
Identities = 635/644 (98%), Gaps = 2/644 (0%)
Strand = Plus / Minus
Query: 2 tgggctgagataatggtgacaccatttcctgagaccctgtggtgtggtctaaagaggaaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 tgggctgagataatggtgacaccatttcctgagaccctgtggtgtggtctaaagaggaaa 985
Query: 62 aaaatgtatcttagaggaattatctctaatccttgccacagccctgggtgtgctttctta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 aaaatgtatcttagaggaattatctctaatccttgccacagccctgggtgtgctttctta 925
Query: 122 ttatcttcatgtaaggatcagaaaagcagggctccgggaagctaaatcattggccttagg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 ttatcttcatgtaaggatcagaaaagcagggctccgggaagctaaatcattggccttagg 865
Query: 182 acgaatcagtgagtaag-acaacagcactcagccgtggctatctcacctgccttcactgg 240
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 864 acgaatcagtgagtaagaac-acagcactcagccgtggctatctcacctgccttcactgg 806
Query: 241 ggagtcgcttcacccaagggcagagatccctgggtgctgagaaacctaaacatgaacttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggagtcgcttcacccaagggcagagatccctgggtgctgagaaacctaaacatgaacttt 746
Query: 301 ccttatgattagttctcatctgccacatgggaaaaggagaacgcccgcgcaacacaagat 360
||||||||||||||||||||||||||||||||||||||||| | | | | ||||||||||
Sbjct: 745 ccttatgattagttctcatctgccacatgggaaaaggagaatggctgtgtaacacaagat 686
Query: 361 aagcaaccagtggcacgactaaatccacccgacaaacttaagaacccggcactaatgact 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagcaaccagtggcacgactgaatccacccgacaaacttaagaacccggcactaatgact 626
Query: 421 aaaggagatgaatcacatttagactctgttggaacaggaactggggggagacccacaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaggagatgaatcacatttagactctgttggaacaggaactggggggagacccacaaac 566
Query: 481 acggtgtgagtaggctctgtagaggagtatgtgtcctgcaccagccttccctaatccaca 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 acggtgtgagtaggctctgtagaggagtatgtgccctgcaccagccttccctaatccaca 506
Query: 541 tactacttccctagaactgggctgagtcggaaacacacgtagctgaatacgattttccta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tactacttccctagaactgggctgagtcggaaacacacgtagctgaatacgattttccta 446
Query: 601 tgcagcaaggcagcttggagcaaccagagccttacttcatcttc 644
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcagcaaggcagcttggagcaaccagagccttacttcatcttc 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
