CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCAATCTCCACTTTTTTTTGTAAAAGAAAACTATGCCACAACAAT
AGAAAGAAAATAATAGTAATTAAAAGAAATGAAAAGTAGATAAATCCAAG
AATGGAGGGCAATTAGGACTCATGCACTGATTCTATGGTAACGCTCTGGA
ACACTGTATATGGTTAAGAGGAAGTGACCCAAGAAACAAAACAAAACTTT
CACCAGGAAATATACCAGTGAAGAAAGCTTTAAAAAGTTTTCAATGACTT
GGTTTTGTTTTTAAGCATTACAAGTAGAGCTAAAATTTTAAGGATTGTAT
CACCATGTTATGACATTTAACAGTTGCAGAGCACAGGAGGATATACCTTT
GTATTGCAGCTCTAACACAACTCAGGTTTGAAACCAAGCAAATATTGTCA
ACATGCAAAAGATACCATAAAATACTCCTGCATTAGATCCAGCTTGTGCA
GAAACAAAATGACTCTACTGGGTAACAGAAACATGATTAAAAGAGTAAGA
CATCAATTTCTGTAACAACTCTCACCAGTAGATCAAATGTAAAAATCCTG
AACTGTCAAGCAAATTAATAGATACCAAACAAGGACATGCAGAAATTTAA
TATCCTTCCTAAATTAAGAAAAACATAAATTGAATTTTATGTT

ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTCTTAATTCATAAACATTGGGCT
CTCCTCCTCCTCCTCCTCCTCCCCTCCTCCTCCTCCCCTCCTCCTCCTCC
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTTCCTCTTGCTCTCCCTTC
TTCTCCTGCTCCTCCTTCTCCTCCTGCTTCTCCTCCTCCTTTTCCTCCAC
AAGTGAAGATGATTTGTTAGCACTTAAATGAAGGTATAACCGTGACCAAA
TCCTTTAACTAAATCTGCTTTATTATGACATGCTCTTCTTTGGGCAGGAA
CGTGCTGTGCTGCTATGATGACGCATTCAGGAAAATGTATTTCCAGATGG
AGACATCCTATACCCCCCCCCCCGCTTATGTCTGTGCGCGCGTGTGTGTG
CGTGCGTCTTTACATTCTTCCTTTTTTTTTTTTTTTCTTTTTCCCTACCT
TTCCTTTTTCTTTTTTTTTTTCCTTTTTTCCTTTTTTTCTTTTTACCTTC
TTTATTTTCCCCTTTCCCCCTTTTTCCTTTTTTCTCAATCTCCAACACTC
TCCACATTACCCTTTTCTTTTCTCTTTTTTCCTTTTTTTCCCCTCCTTCT
CTTACCTCCTATTCTCGTCCCTTATTTCTTTTCCTCCCCCTTCTTTTATT
CTTCTTTTTTTCCCTCCCTCTTCTCCG

Query= MSMg01no144_o14.b1 MSMg01no144_o14.b1 CHROMAT_FILE:
MSMg01no144_o14.b1 PHD_FILE: MSMg01no144_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:51 2005
         (649 letters)



>mm_chr9_23654697_23655743
          Length = 1047

 Score = 1056 bits (546), Expect = 0.0
 Identities = 632/680 (92%), Gaps = 36/680 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatcaatctccac-----ttttttttgtaaaagaaaactatgccacaacaatag 58
           |||||||||||||||| ||     ||||||||||||||||||||||||| ||||||||||
Sbjct: 170 ggaattcatcaatctctactttttttttttttgtaaaagaaaactatgcaacaacaatag 229

                                                                       
Query: 59  aaagaaaataatagtaattaaaagaaatgaaaagtagataaatccaagaatggagggcaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 aaagaaaataatagtaattaaaagaaatgaaaagtagataaatccaagaatggagggcaa 289

                                                                       
Query: 119 ttaggactcatgcactgattctatggtaacgctctggaacactgtatatggttaagagga 178
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 290 ttaggactcatacactgattctatggtaaggctctggaacactgtatatggttaagagga 349

                                                                       
Query: 179 agtgacccaagaaacaaaacaaaactttcaccaggaaatataccagtgaagaaagcttta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agtgacccaagaaacaaaacaaaactttcaccaggaaatataccagtgaagaaagcttta 409

                                                                       
Query: 239 aaaagttttcaatgacttggttttgttttta--------------------agcattaca 278
           ||||||||||||||||||| ||||||||||                     |||||||||
Sbjct: 410 aaaagttttcaatgacttgtttttgttttttttttgtttttttttttttttagcattaca 469

                                                                       
Query: 279 agtagagctaaaattttaaggattgtatcaccatgttatgacatttaacagttgcagagc 338
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 470 agtagagctaaaattttaaggattgtatcaccatgttatgatatttaacagttgcagagc 529

                                                                       
Query: 339 acaggaggatatacctttgtattgcagct-c----taac-ac---aactcaggtttgaaa 389
           ||||||| ||||||||||||||||||| | |    |||| |    |||||||||||||||
Sbjct: 530 acaggagaatatacctttgtattgcagatacaagataactaaggtaactcaggtttgaaa 589

                                                                       
Query: 390 ccaagcaaatattgtcaacatgcaaaagataccataaaatactcctgcattagatccagc 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ccaagcaaatattgtcaacatgcaaaagataccataaaatactcctgcattagatccagc 649

                                                                       
Query: 450 ttgtgcagaaacaaaatgactctactgggtaacagaaacatgattaaaagagtaagacat 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 650 ttgtgcagaaacaaaatgactctactgggtaacagaaacatgattaaaag--taagacat 707

                                                                       
Query: 510 caatttctgtaacaactctcaccagtagatcaaatgtaaaaatcctgaactgtcaagcaa 569
           | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ccatttctgtaacaaatctcaccagtagatcaaatgtaaaaatcctgaactgtcaagcaa 767

                                                                       
Query: 570 attaatagataccaaacaaggacatgcagaaatttaatatccttcctaaattaagaaaaa 629
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 attaatagataccaaacaaggacatgcagaaatttaatatccttcctaaattaagaaaaa 827

                               
Query: 630 cataaattgaattttatgtt 649
           ||||||||||||||||||||
Sbjct: 828 cataaattgaattttatgtt 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1047
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1037
Effective search space:   662643
Effective search space used:   662643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)