BAC Information

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BAC

Clone NameMSMg01-145N01
Chromosome9 (Build37)
Map Location 104,089,570 - 104,090,042
singlet/doubletsinglet
Overlap genenone
Upstream geneSrprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik, EG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16
Downstream geneAcpp, LOC100040921, Cpne4, Mrpl3, Nudt16, 1700080E11Rik, Nek11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145N01.T7 (MSMg01no145_n01.b1)MSMg01-145N01.TJ (MSMg01no145_n01.g1)
ACCAG349518AG349519
length691702
length of high quality
(start - end)
477 (52 - 528)---
definitionCHROMAT_FILE: MSMg01no145_n01.b1 PHD_FILE: MSMg01no145_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:01 2005CHROMAT_FILE: MSMg01no145_n01.g1 PHD_FILE: MSMg01no145_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTTATTTTCCTAGATGCTGATTTTTGGTCCTTTGTCTT
TAAGGTTAAGCTTCTGAAAGATTCCCTTGACGCTTGGAAGAAGGAAGTAG
AAAAGAAGCCACCTATGATGTCCATAGACGATGCTTATGAAGTGCTTAAT
CTGCCTATAGGCCAGGGGCTGTGAGTTATTTCAGTATGATAGGAGTAGAT
GTCTGCTTCCATTTTAAAAGCCATACTTACTTACACACAAGGCCTATGAG
AATCATCTGGAATTCGAGGCACTGACTTTGACATTTTGTTCTTGTTGGTA
ACCAAGAAGAACAGTAATAAAGTGTGCAGTGCACCTAGCCCTCAGCAGGC
TCATGGCTCCCATGCACACACTTTCTCCTGCACTGTCTGCTGTGCTTGGG
GAAGGGCTGCTGGAGTATGCCCACAGCACTACGCTCGGATTAGAATTCCT
GCCAACTTTTATAGTGCCGTACACCGTAGGAGAAAGTGCCGAGTAGGCAT
GTTTTTAAAGAACAGAATAAATGTCTTTTGTAAAGGTGTCTTACTTACTT
ACTGATAGAGTAACAAAATTATATAGGTTACAGTGGCCTTTGGACAGATT
GCCGGATTTTAAAACATTATTTTTATTTTACCAAATCCCCC
TTTTTTGATGAAGTGGGAGGCTGGNGGCGCCTGTTTCGGAAAGANGNGAN
NNNNNNNGGTGGCAAAAAAGGGGGNNNNCNCGAAGGNANNAAGGCNAGGG
NCCCCAAGAGTAAGCCCGCANGGAAGACGGNGGAAAAGGAAGGCCGGCCA
CAGGCTGGCAGCAGCCGGGGGCGAGGAAGAAACAAAAGGACAGAAGGGAA
CTTCAGGGACCTGCCTAAGGCCCCGCGCCCGACGCGCCAGAAACTTTTTT
TTTTTGTGTCGAGAGGTGACAACCCAGGGTGACAGATGGTAGATGGAACA
AAGGAGGGCAATTTTTAATCCTTTTAAGGACGCGAGACCAGCCGCAGAAA
CACAGTTGCTTCCCCCGCCCGCCAGCAAGCGGAAAGGAGCCGCTTTTATA
CTACATCTGCCCATCGCAGATAATTACCTTGTGTTCTACATACCACTATA
CTGTTTATTGACTGACTTTACCAATTAAGCTGGTGTTTTTCTCCTTTTGT
TCCTCAGTATCACCTTTGCTGGATATAGTTCTTCGTACACCAACCGTAGA
TCAGGTTTTGGTTTCATTCTGTATTTTGACCTATGGTTTATTGGATTTCA
CCTTTTTCGGATTTTTCCTATTAACGTGTTTTCCCCCGATTATTTTACCC
CCAAGCTTTTCTCCATTGTTCCTCTTTTTTTTTTTTTTCCCATCCTTCTA
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_n01.b1 MSMg01no145_n01.b1 CHROMAT_FILE:
MSMg01no145_n01.b1 PHD_FILE: MSMg01no145_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:01 2005
         (477 letters)



>mm_chr9_104089366_104090242
          Length = 877

 Score =  907 bits (469), Expect = 0.0
 Identities = 472/473 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttattttcctagatgctgatttttggtcctttgtctttaaggttaagcttct 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaattcttttattttgctagatgctgatttttggtcctttgtctttaaggttaagcttct 618

                                                                       
Query: 65  gaaagattcccttgacgcttggaagaaggaagtagaaaagaagccacctatgatgtccat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaaagattcccttgacgcttggaagaaggaagtagaaaagaagccacctatgatgtccat 558

                                                                       
Query: 125 agacgatgcttatgaagtgcttaatctgcctataggccaggggctgtgagttatttcagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agacgatgcttatgaagtgcttaatctgcctataggccaggggctgtgagttatttcagt 498

                                                                       
Query: 185 atgataggagtagatgtctgcttccattttaaaagccatacttacttacacacaaggcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atgataggagtagatgtctgcttccattttaaaagccatacttacttacacacaaggcct 438

                                                                       
Query: 245 atgagaatcatctggaattcgaggcactgactttgacattttgttcttgttggtaaccaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atgagaatcatctggaattcgaggcactgactttgacattttgttcttgttggtaaccaa 378

                                                                       
Query: 305 gaagaacagtaataaagtgtgcagtgcacctagccctcagcaggctcatggctcccatgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaagaacagtaataaagtgtgcagtgcacctagccctcagcaggctcatggctcccatgc 318

                                                                       
Query: 365 acacactttctcctgcactgtctgctgtgcttggggaagggctgctggagtatgcccaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acacactttctcctgcactgtctgctgtgcttggggaagggctgctggagtatgcccaca 258

                                                                
Query: 425 gcactacgctcggattagaattcctgccaacttttatagtgccgtacaccgta 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcactacgctcggattagaattcctgccaacttttatagtgccgtacaccgta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)