BAC Information

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BAC

Clone NameMSMg01-146C03
Chromosome9 (Build37)
Map Location 23,439,560 - 23,440,357
singlet/doubletsinglet
Overlap genenone
Upstream geneBbs9, Bmper
Downstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146C03.T7 (MSMg01no146_c03.b1)MSMg01-146C03.TJ (MSMg01no146_c03.g1)
ACCAG349753AG349754
length1,1961,221
length of high quality
(start - end)		654 (86 - 739)798 (86 - 883)
definitionCHROMAT_FILE: MSMg01no146_c03.b1 PHD_FILE: MSMg01no146_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:32 2005CHROMAT_FILE: MSMg01no146_c03.g1 PHD_FILE: MSMg01no146_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAACCCTTTTTNTTCCACTGCGCGCANACGACTCCTAAGGGAGAGGATCC
GCGGAATTCTTTGTTCAGTTCTGAGCTTTTAAGGTTAATGGGGTTATTTG
ATTTTCTGAAGTCCACCCTTTTCTCTTATGAATACCCATGCAAAAATCCT
CAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAGCAATCATCC
ATCCTGACCAAGTAGGTTTTATTCCAGGGATGCGGGGATGGTTTAATATA
CGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAA
CCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAAC
ACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATAC
CTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGT
AAATGGAGAGAAACTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAG
GCTGCCCACTTTCTCCCTACCTTTTCTTTTTTTTTCCCCCTTTTTTATTA
GGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATAC
CCACCCACCCCCACTACCCTACCCACCCACTTCCCCTTTTTGGCCCTGGC
GTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTACAATGGGCCTCTCT
TTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGTTAGAGT
CAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGG
TTGCAGATTCCTTTAGCTCCTTGGGTACTTTTCCTAGCTCCTCCATTGGG
AGCCCTTGAAGTTATTAGCCAGAGCAATTATACAACAAAAGGACATCAAG
GGTATACAAATTGTATAAGAGAAGTCCAAATACCCCTTTTTGGAGATGAA
ATGATAGTATTTTTAATTGAACCTAAAATTTTTACCTAAAAATACTAAAC
CTTATAAACACTTTTTCTTAAATTATTGGAAATATATTAATTCTAAATAT
TAATGTCTTTTTCTCTCCAAAAAATAAAACGGTGAAAATAAATTTAGGAA
AAATCCTTTTTCCTAAGCTTAAATAAAATTAAATTTTTGGTGTGTTCTAT
TTATTAGGTAAATAACTTTGTTACAAATTTATTTTTTTATAAAATA

NCCATTCTTTTTTTTAGAGGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATAAGAATCACCTTCATAG
ATTTCAGGAGGTTTCCACTACACTAGGATTCCACACCACCTCCAAATGCT
CATCCAATTTCAGCCATCTCTCCTCACACACTCCCTTCATCCCATAATTC
TTCTATCTTGACCTTCCCCAGGCCTTTCCTACTCCTTTCTTTACTGGTTT
GACTCCAATCTGCCCATAAAAACTACTCTATTTCTTCCTGCAATGGATAA
CCTTGAATCCCTCCTAGACTCTAACCTCTCTGGATTTACTGATTGTAGTT
TTGGAACACCCATGTGACTGTGAGTTTGGGGTACTAAACTCTCCCATTAT
TGTTGCTGGCTAATTGTTTTCCTTTATATGTAGGTGACTTTATTATTGTT
TCAGGTGTTTTTATTTTGAAGATGATTCTGAGTGGTCTTGCCTTTTTGAT
GATGCACTTCACTGTGCCTTTTATGTAGTATTTTGTGTTTCATCTCAACT
TTTGTCTTTGCTCATTCAGAGAGATTCCAATTTGCTGTTTTGCCTTCCTG
GAATTTGAGCCTCATAGTCCTAATTGTGTAGATAAAAATAATCTTCAATT
GATGTATGAAATTGATTTCCTTCCTCTTTATATAAACACCACTAGAAAAG
ATAAATACTTCTTATTGTTATCTATAAAATTAGCATTCATTAAAATTTTA
GAAGTTCATTATGGAGCATTTCACTTGTAAGGAAACAATGGAACAATTTT
ATGGTGAATGCATGTACACCCTGATTACTTAGGTTTATCATTAATATTTA
TTGCGTTTCATTACATGCTTATATCCTCAAGCTTTTTTTCTCTTTGAATC
AAAGTGCATTGCAGACCTGACATACTTTACTCTAAACAATTTAACCCGCG
AATCAGGGAATAATATTAAAAATTTGTTAAGGGCCCCTTAAAGGAAAAAT
TTATAGGGTAAAAAAGGCATATAAATCCAATGAAAGCATGATTGAAATTT
AATCCAAGGCTCTGGCCCTAAAAAAATTTCACATAATTGCCGGGGGGGTT
GCCCAAATTTGGAAAAGGTGGAACTCCCCATTTTTCTTCCAAAATTTTAA
ATCTTTGTGCTGTTCACAACAAAAACTTTCACATTTTTTTGTATAAAATA
TTTTACAATCCCCCACTCGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_c03.g1 MSMg01no146_c03.g1 CHROMAT_FILE:
MSMg01no146_c03.g1 PHD_FILE: MSMg01no146_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:33 2005
         (798 letters)



>mm_chr9_23439360_23440557
          Length = 1198

 Score = 1497 bits (774), Expect = 0.0
 Identities = 792/798 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatcaccttcatagatttcaggaggtttccactacactaggattccacaccacctccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatcaccttcatagatttcaggaggtttccactacactaggattccacaccacctccaa 260

                                                                       
Query: 61  atgctcatccaatttcagccatctctcctcacacactcccttcatcccataattcttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctcatccaatttcagccatctctcctcacacactcccttcatcccataattcttcta 320

                                                                       
Query: 121 tcttgaccttccccaggcctttcctactcctttctttactggtttgactccaatctgccc 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgaccttcctcaggcctttcctactcctttctttactggtttgactccaatctgccc 380

                                                                       
Query: 181 ataaaaactactctatttcttcctgcaatggataaccttgaatccctcctagactctaac 240
           |||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ataaaatctattctatttcttcctgcaatgggtaaccttgaatccctcctagactctaac 440

                                                                       
Query: 241 ctctctggatttactgattgtagttttggaacacccatgtgactgtgagtttggggtact 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 ctctctggatttactgattgtagttttggaacacccatgtgattgtgagtttggggtact 500

                                                                       
Query: 301 aaactctcccattattgttgctggctaattgttttcctttatatgtaggtgactttatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaactctcccattattgttgctggctaattgttttcctttatatgtaggtgactttatta 560

                                                                       
Query: 361 ttgtttcaggtgtttttattttgaagatgattctgagtggtcttgcctttttgatgatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtttcaggtgtttttattttgaagatgattctgagtggtcttgcctttttgatgatgc 620

                                                                       
Query: 421 acttcactgtgccttttatgtagtattttgtgtttcatctcaacttttgtctttgctcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttcactgtgccttttatgtagtattttgtgtttcatctcaacttttgtctttgctcat 680

                                                                       
Query: 481 tcagagagattccaatttgctgttttgccttcctggaatttgagcctcatagtcctaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcagagagattccaatttgctgttttgccttcctggaatttgagcctcatagtcctaatt 740

                                                                       
Query: 541 gtgtagataaaaataatcttcaattgatgtatgaaattgatttccttcctctttatataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgtagataaaaataatcttcaattgatgtatgaaattgatttccttcctctttatataa 800

                                                                       
Query: 601 acaccactagaaaagataaatacttcttattgttatctataaaattagcattcattaaaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acaccactagaaaagataaatacttcttattgttatctataaaattagcattcattaaaa 860

                                                                       
Query: 661 ttttagaagttcattatggagcatttcacttgtaaggaaacaatggaacaattttatggt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttttagaagttcattatggagcatttcacttgtaaggaaacaatggaacaattttatggt 920

                                                                       
Query: 721 gaatgcatgtacaccctgattacttaggtttatcattaatatttattgcgtttcattaca 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gaatgcatgtacaccctgattacttaggtttatcattaatatttattgcgtttcattaca 980

                             
Query: 781 tgcttatatcctcaagct 798
           ||||||||| ||||||||
Sbjct: 981 tgcttatatactcaagct 998


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 798
Length of database: 1198
Length adjustment: 10
Effective length of query: 788
Effective length of database: 1188
Effective search space:   936144
Effective search space used:   936144
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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