Query= MSMg01no146_n06.b1 MSMg01no146_n06.b1 CHROMAT_FILE:
MSMg01no146_n06.b1 PHD_FILE: MSMg01no146_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:04 2005
(690 letters)
>mm_chr9_27081624_27082713
Length = 1090
Score = 1282 bits (663), Expect = 0.0
Identities = 675/679 (99%)
Strand = Plus / Plus
Query: 12 tagagagaaagagagtgagagagagtgagagagagcaatagggtgagagagcaagagagc 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tagagagaaagagagtgagagagagtgagagagagcaatagggtgagagagcaagagagc 271
Query: 72 gagagagtgagagagactgagaggctgagagagagtgaaagagcaccagagacctgaaat 131
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 272 gagagagtgagagagactgagagactgagagagagtgagagagcaccagagacctgaaat 331
Query: 132 gcagcatgatgtcttccctgggtctctagtcagttagcctgtgctttggactttggactt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gcagcatgatgtcttccctgggtctctagtcagttagcctgtgctttggactttggactt 391
Query: 192 gctatttccattgcatgaaccagttccttaaaaatcagtcaaccaaccaatcatttaatt 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gctatttccattgcatgaaccagttccttaaaaatcagtcaaccaaccaatcatttaatt 451
Query: 252 agtcaatccatcaatttctccttcctgttccaggacagtcagggctacacagataaaccc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 agtcaatccatcaatttctccttcctgttccaggacagtcagggctacacagataaaccc 511
Query: 312 tgtctcacaaaacaaaaaacttctcctttctttcctccctctctttttccatcccctccc 371
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 512 tgtctcacaaaacaaaaaacttctccttcctttcctccctctctttttccatcccctccc 571
Query: 372 cattcatgcatgcacatcctcccatttattctatttgtctagcatgccctcactaatact 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cattcatgcatgcacatcctcccatttattctatttgtctagcatgccctcactaatact 631
Query: 432 tcataaatggtactgaatgaagaatgaaatttcttgactactgaaaattttatattaggt 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tcataaatggtactgaatgaagaatgaaatttcttgactactgaaaattttatattaggt 691
Query: 492 ctggcttccttcccagttttgagtgttggttttacctatagtcatgctttttctcatcag 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ctggcttccttcccagttttgagtgttggttttacctatagtcatgctttttctcatcag 751
Query: 552 tcatcagaacgttggatttgtcctgctagaaaccctattcattcaccattcatccagtat 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tcatcagaacgttggatttgtcctgctagaaaccctattcattcaccattcatccagtat 811
Query: 612 tttaccagaaactgttactgctgttatctctgctgtataacatgttatctcaaacctaat 671
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tttaccagaaactattactgctgttatctctgctgtataacatgttatctcaaacctaat 871
Query: 672 agtttagtacgtttgttcg 690
|||||||||||||||||||
Sbjct: 872 agtttagtacgtttgttcg 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_n06.g1 MSMg01no146_n06.g1 CHROMAT_FILE:
MSMg01no146_n06.g1 PHD_FILE: MSMg01no146_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:04 2005
(437 letters)
>mm_chr9_27182789_27183629
Length = 841
Score = 750 bits (388), Expect = 0.0
Identities = 424/444 (95%), Gaps = 16/444 (3%)
Strand = Plus / Minus
Query: 1 tattactcgagcataagggctggaaactgttgctgaccatttgtcattgtttcaggccag 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tattactggagcataagggctggaaactgttgctgaccatttgtcattgtttcaggccag 734
Query: 61 gtggcagagcagttgctgactagctgcctgaagcctaggtttttaggcctaatctcctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gtggcagagcagttgctgactagctgcctgaagcctaggtttttaggcctaatctcctga 674
Query: 121 actgtcaatttgaaccctgtcatggagtcagcctgtcacatcaacacaaaataaactatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 actgtcaatttgaaccctgtcatggagtcagcctgtcacatcaacacaaaataaactatg 614
Query: 181 gagtcaatgaaattcccatcaaaagtatattttctaaacacaaaaaaaaattaaattaga 240
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 613 gagtcaatgaaattcccatcaaaagtatattttctaaacacaaagaaa--ttaaattaga 556
Query: 241 aataatgaggagatttgggaaatccaaaatattctattta----ctaaacatgtttatcc 296
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 555 aataatgaggagatttgggaaatccaaaatatt----ttaaaagctaaacatgtttatcc 500
Query: 297 ataatacctgtataaaattat------atgaaaacttgaacattttctgaaataaatttt 350
|||||||||| |||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 499 ataatacctggataaaattatgaaattatgaaaacttgaacattttctgaagtaaatttt 440
Query: 351 catgaacaatttgtagggtaaatacaaaagtatatggaatgtgcagtatattcattcatt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 catgaacaatttgtagggtaaatacaaaagtatatggaatgtgcagtatattcattcatt 380
Query: 411 ctcccagtaccacaaaagagaagg 434
||||||||||||||||||||||||
Sbjct: 379 ctcccagtaccacaaaagagaagg 356
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 841
Length adjustment: 9
Effective length of query: 428
Effective length of database: 832
Effective search space: 356096
Effective search space used: 356096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
