Query= MSMg01no147_d13.b1 MSMg01no147_d13.b1 CHROMAT_FILE:
MSMg01no147_d13.b1 PHD_FILE: MSMg01no147_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:45 2005
(674 letters)
>mm_chr9_7461784_7462858
Length = 1075
Score = 1062 bits (549), Expect = 0.0
Identities = 639/669 (95%), Gaps = 1/669 (0%)
Strand = Plus / Minus
Query: 6 ggaattcaacactatacag-accgagaagcattgacctcctccacaaggtcagctcccca 64
|||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 874 ggaactcaacactatacagcaccaagaagcactgacctcctccacaaggtcagctcccca 815
Query: 65 tcgtgtcactcccatctttgcaccacagtctagtttctcaggactatttccacttgtgga 124
| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 814 ttgtgtcactctcatctttgcaccgtggtctagtttctcaggactatttccacttgtgga 755
Query: 125 tgtctgccctcatggagagacaaatgatattttattgatagataatactttgatagaatg 184
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 754 tgtctgccctcatggagagacaaacgatattttattgataaataatactttgatagaatg 695
Query: 185 gatgtttggattgatttgatagctctcatttcctctcttcattgaaccagagcttccttg 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 694 gatgtttggattgatttgatagctctcatttcctctcttcattgaaccacagcttccttg 635
Query: 245 actacgaggagtaatacgtgagtcaatcagcataggaggaaactgagagaggatctcaca 304
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 actaagaggagtaatacgtgagtcaatcagcataggaggaaactgagagaggatctcaca 575
Query: 305 aagacaaactttctcttcatgggcatcagatggagtgtaggtgcgcacgagaaggcttca 364
||||| ||| |||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 574 aagaccaaccttctcttcatgggcatcagatggagtgtaggtgcacatgagaaggcttca 515
Query: 365 gcggcgtgacctcagctcaggcaaggaacacaggaaaacattgccatcaggagctgggca 424
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 514 gcggggtgacctcagctcacgcaaggaacacaggaaaacagtgccatcaggagctgggca 455
Query: 425 ggggcagttaaaggtgggtggcatctaagatgctcttgttattttattttgtttttaaaa 484
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ggggcagttgaaggtgggtggcatctaagatgctcttgttattttattttgtttttaaaa 395
Query: 485 taaggttttgaaattctatgtattttaaatatatagaatatattttgaacataggttctt 544
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caaggttttaaaattctatatattttaaatatatagaatatattttgaacataggttctt 335
Query: 545 ttccctcatactcttctcaccttcccacccttccttctaactccactctttccctgtctc 604
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttccctcatactctcctcaccttcccacccttccttctaactccactctttccctgtctc 275
Query: 605 ttaagaaaacaggtagagaagcaaaaacgacaaacaaggataaaagaaaatgaacagaaa 664
|||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 274 ttaagaaaacagacagacaagcaaaaatgacaaacaaggaaaaaagaaaatgaacagaaa 215
Query: 665 gaaaaataa 673
|||||||||
Sbjct: 214 gaaaaataa 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1075
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1065
Effective search space: 707160
Effective search space used: 707160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_d13.g1 MSMg01no147_d13.g1 CHROMAT_FILE:
MSMg01no147_d13.g1 PHD_FILE: MSMg01no147_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:45 2005
(641 letters)
>mm_chr9_7358664_7359704
Length = 1041
Score = 1216 bits (629), Expect = 0.0
Identities = 638/641 (99%)
Strand = Plus / Plus
Query: 1 atatctcctaaaagagcagcctgtgctctttgctcctgtgtcatctctccagccccagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatctcctaaaagagcagcctgtgctctttgctcctgtgtcatctctccagccccagtt 260
Query: 61 ataatatttttcttgaaaaatcaatcaattttgaaaataactgtggtcttctaaataaaa 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataatatttttcttgaaaagtcaatcaattttgaaaataactgtggtcttctaaataaaa 320
Query: 121 tctttctgtgactgtaccaagccatcaatggagatgtgatagctataagaagttgaagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttctgtgactgtaccaagccatcaatggagatgtgatagctataagaagttgaagct 380
Query: 181 tggagtccttttaatcacttgtgtatgaacagcagtctaaacccaagacaagaaagcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggagtccttttaatcacttgtgtatgaacagcagtctaaacccaagacaagaaagcatt 440
Query: 241 ctctagccagcacatgactccaaaggtagctccatatgaccacaagactgaagaggaggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctagccagcacatgactccaaaggtagctccatatgaccacaagactgaagaggaggt 500
Query: 301 aggaggaaataaggcttctgttcttgttagatgtgttgtgtggctcatttcacatcagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaggaaataaggcttctgttcttgttagatgtgttgtgtggctcatttcacatcagaa 560
Query: 361 agtgggttgtagcattgctatgtggccttacaggacattaaatggaagcctccttaagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgggttgtagcattgctatgtggccttacaggacattaaatggaagcctccttaagca 620
Query: 421 caggaggaactatgagtagcacacgctttgtttgtcacaggaaaaagacaacatggtgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggaggaactatgagtagcacacgctttgtttgtcacaggaaaaagacaacatggtgag 680
Query: 481 cctgccatgtctgtgtcctggtctgccttctatcagttttattttctgtcctgacatctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgccatgtctgtgtcctggtctgccttctatcagttttattttctgtcctgacatctt 740
Query: 541 ggctccctatcttctgtattgtgtatgctgtagagatctcaaagcttgtgagtttgtgaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggctccctatcttctgtattgtgtatgctgtagagatctcaaagcttgtgagtttgtgaa 800
Query: 601 gcatgtccaatgttaaaactgactggtatattgtccaagaa 641
| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 801 gtatgtccaatgttaaaactgactggtgtattgtccaagaa 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
