BAC Information

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BAC

Clone NameMSMg01-149L16
Chromosome9 (Build37)
Map Location 22,100,366 - 22,100,916
singlet/doubletsinglet
Overlap geneZfp810
Upstream geneAp1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092
Downstream geneLOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805, Bmper
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149L16.T7 (MSMg01no149_l16.b1)MSMg01-149L16.TJ (MSMg01no149_l16.g1)
ACCAG352370AG352371
length712712
length of high quality
(start - end)
577 (43 - 619)553 (75 - 627)
definitionCHROMAT_FILE: MSMg01no149_l16.b1 PHD_FILE: MSMg01no149_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:06 2005CHROMAT_FILE: MSMg01no149_l16.g1 PHD_FILE: MSMg01no149_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:06 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGA
ATTCAAAAGATTACCCACATTCCACAAGGAATCAAGAATTACAATTGTTC
CCCAAAGTTTCAAGCTTTCCCTATTCCCAAGCCTGAGGCCAAAATAATAA
TAATTGAAAACTTATCATTACTTGAACTTTTTAACTTTTGACTTATTATA
CTTCAGAATTCAGAGTTCTGAGGTCAGCTACTTGCATTTTCTTGTGAAGC
TCTAATGATAAATGACATGGGCAAAGCTGCCAGGCAGTAGTCAGAAAGAA
TCAAGTTAACCCTTAACTCAGTAGTTCTGCTAGCTTCTGCTTCTGCACAT
TACACACAATGACTCTCCTAAGAGTCCCAGTGTTCTGACTTAGTTCTACT
AGTATAAGATTTTATGTATTCTATACTTGTTTATCCAGAAATCACTCTTA
AATGTTGTGCAAAACTTATTTCTTCTTTTCTTGGGGTCCCAGTGTTGACT
CTATTTCATTTTCTAATAATTTCTTCAAACTTACTTCTCAAAGTCAAGCA
TTAATCTGGAACTACCATTGAGCAGTTATTACATTGTTTCCAAGATGAGA
ACACACAGCATGCGCCTGGGCCATTAAGACTGTGCCGTGCTGTACCCCTA
TGTTTAATTTTTAATTGTTTAAGAACCACTACTTCAAGGAACATCTAGTT
TCACAGAATTCG
TTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAATAACATGAAGAATGCAGGAACC
TTTTCTCTTGCAAGTCACAGCTCTGTACATCAGAAATGTCATGCAGGACA
TAAACAATATGAATGCAAAGCTTTCTTGAGAAAGTATGACTTTGCTTGAC
ATCAACGGATTCATACAGATGAGAAACCTAATGAATATGGAAATATAGGG
AAGCCTTCCTTTACAAGTCATGCATGCGTACACCACAGACTCTGCGTAGG
AGAGGAGCTCTATGAAGGTAACGACTGTAGGAAAGCCTTCTATCAAAGCC
AGACCTCATTGTGCATCAGATAATTCAGAAGGGAAGAACCCTAATGTAAG
GGTGTAAGGATGAAGGAAATATTTCTCTCTCAGGTCAAAACTATATTAGA
GAATACATAAGGGGAGAAACTCTATGACTAAGGAATATAAAAAGCTTTCT
GCCCAGACAGAATTCATTGCACATCAGAGAGCATGCACATGACCTTTGGA
TATAAAGACTACAGGAAAGCTTTCTATTGCAAGCCACAACTTCCATGGCA
TGAGGGATCCCTTCCAGGCTCTAAGACTGTGAGGAATTCCGGGTATATCT
CAGTGTGCACTAGAGCACTCATTTCTGGCTAGAATCTGTATGAAGACAGA
CGTAGGAAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_l16.g1 MSMg01no149_l16.g1 CHROMAT_FILE:
MSMg01no149_l16.g1 PHD_FILE: MSMg01no149_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:06 2005
         (553 letters)



>mm_chr9_22100000_22100952
          Length = 953

 Score = 1006 bits (520), Expect = 0.0
 Identities = 544/552 (98%), Gaps = 2/552 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaataacatgaagaatgcaggaaccttttctcttgcaagtcacagctctgtacatcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 ctaataacatgaagaatgcaggaaccttttctcttgcaagtcacagctctgtacatcaga 858

                                                                       
Query: 61  aatgtcatgcaggacataaacaatatgaatgcaaagctttcttgagaaagtatgactttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 857 aatgtcatgcaggacataaacaatatgaatgcaaagctttcttgagaaagtctgactttg 798

                                                                       
Query: 121 cttgacatcaacggattcatacagatgagaaacctaatgaatatggaaatatagggaagc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 797 cttgacatcaacggattcatacagatgagaaacctaatgaatatggaaatgtagggaagc 738

                                                                       
Query: 181 cttcctttacaagtcatgcatgcgtacaccacagactctgcgtaggagaggagctctatg 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 737 cttcctttacaagtcatgcatgcgtacaccacagactctgcgtaggcgaggagctctatg 678

                                                                       
Query: 241 aaggtaacgactgtaggaaagcctt-ctatcaaagccagacctcattgtgcatcagataa 299
           ||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||
Sbjct: 677 aaggtaacgactgtaggaaagccttcct-ccaaagccagacctcattgtgcatcagataa 619

                                                                       
Query: 300 ttcagaagggaagaaccctaatgtaagggtgtaaggatgaaggaaatatttctctctcag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttcagaagggaagaaccctaatgtaagggtgtaaggatgaaggaaatatttctctctcag 559

                                                                       
Query: 360 gtcaaaactatattagagaatacataaggggagaaactctatgactaaggaatataaaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtcaaaactatattagagaatacataaggggagaaactctatgactaaggaatataaaaa 499

                                                                       
Query: 420 gctttctgcccagacagaattcattgcacatcagagagcatgcacatgacctttggatat 479
           |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 498 gctttctgcccagacagaattcattgcacatcagagagcacgcacatgccctttggatat 439

                                                                       
Query: 480 aaagactacaggaaagctttctattgcaagccacaacttccatggcatgagggatccctt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaagactacaggaaagctttctattgcaagccacaacttccatggcatgagggatccctt 379

                       
Query: 540 ccaggctctaag 551
           ||||||||||||
Sbjct: 378 ccaggctctaag 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)