BAC Information

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BAC

Clone NameMSMg01-150D24
Chromosome9 (Build37)
Map Location 70,090,710 - 70,090,863
singlet/doubletsinglet
Overlap geneMyo1e
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik
Downstream geneCcnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150D24.T7 (MSMg01no150_d24.b1)MSMg01-150D24.TJ (MSMg01no150_d24.g1)
ACCAG352740AG352741
length827729
length of high quality
(start - end)
156 (71 - 226)344 (75 - 418)
definitionCHROMAT_FILE: MSMg01no150_d24.b1 PHD_FILE: MSMg01no150_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:45 2005CHROMAT_FILE: MSMg01no150_d24.g1 PHD_FILE: MSMg01no150_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAGGCCATTACCGGAGACAAGAAGGAACATTCTACATTATTCT
AGAAGGAATTGCCACACTTGGAACAGAGCAATGCTGAGCTGCTTGTCTCT
TTATACGTGGAAATGGTGAGGCAAGCTGATATTTAGTGTGCATGTGCGTG
TGTGTGTATGTGTGTGTGTGTGTGTGTCACTGAATANATAAACGCGCTAA
CCAGCTACTTCAAACCAACCAACTATGCAATTATCACATTCACCGTATGG
GACATGCACCTGGCGGGAGGGAAAATTAAATAAATGCCAAGGAAAAGGAA
AGAAAAAAAGGGAAAAAATAAAACAAAAACACAAAAGATTATTTAACCAC
CACATATGAACGGTGTAAGTGAGTTACACACACCCACAAAAAAGNGNTAA
AGGGGTTAGGTCTATAGACAGGACGCGGGTATTTACACTTAATTAATCCT
GTTAATGTTTTTGATAGAGACGGTGTTCTGAATGAGCGCCCTCTATACGT
TGGGTAGACCTTCGCCCCCTAGAAACTGGAGGTCTTAGGTACACATTGGA
TTTTTGCCCTAACACGGGGGGTTCAACGCGGCTATATGGAGCCACCCACT
GGCGATCAATTGGTTACGAGAATGATCTCATCTTCATGCGCAGCGATTCC
GGTGAGGGAATTCGTGAAAGTGGAGCGAAGGAAGATGGCCGGGGGGTAAA
CGAATGGTTAAGTGGGGAGATATAAGTGTATAATTTGCCAGTTCCCCCGT
GCCCCGTGTGTACGATTTACCTGAGAG
CGATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTATATAAACCAAGCTGGCCTTGAA
CTCACAGAGATGCACCTCCTTCTGCTTCTGCTTCCTGAGTGCTGGGATTA
AAGACACAGCCTGCCTATACCACCTTATTTTTTGACCATTTAGCTAGGCT
GATGAGGTCAGTGAAACCTCTGGCTCCTCCTGTCTGCTCACCTTCGCTGT
TGTGAGTGTAGGCACACACAATAGGGTTTTTATTTACTACAGATGCTAGG
TAGGATTGACCTCAGGCCCTCGGTTTTTCATGGCGAGCACTTTATACGCT
GAGCCATCTTTTCAGCCTCTCTGGCTTTTCCTCTACAGTAAATAAAGCAA
ATGGAAGGCTGTCTGAAACCCCACCACGGTTCAAAAACCCAAGGAGAGCA
GACATTTCTTCACAGGTGACACCAGTTTTCTGGGTGTTTAGTACGCAAAG
GAAGCATCTCCTGTAGAGATAACATGGGGACCCAAGACGTCGGATAGCCT
GGGAGAGGTGGGACTTTGGTAATGAGAGGATTTCACGGCCCAGGTGTTGC
AGATAAGAGAGACTCAAACAAGGAACAAAAGAAAAAAAGGGGAAAGTTTA
ATCGGTACANAAAAAAGCATGTCTTNTTTACGTGTCCCACCCTCCCCTAA
TAGTGGGGAACCAATGGGGTCGTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_d24.b1 MSMg01no150_d24.b1 CHROMAT_FILE:
MSMg01no150_d24.b1 PHD_FILE: MSMg01no150_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:45 2005
         (156 letters)



>mm_chr9_70090549_70091104
          Length = 556

 Score =  267 bits (138), Expect = 2e-76
 Identities = 151/156 (96%), Gaps = 2/156 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagacaagaaggaacattctacattattctagaaggaattgccacacttggaacagagca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 315 gagacaagaaggaacattctacattattctagaaggaattgccacactaggaacagagca 256

                                                                       
Query: 61  atgctgagctgcttgtctctttatacgtggaaatggtgaggcaagctgatatttagtgtg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 255 atgctgagctgcttgtctctttatacgtggaaatggtgaggtaagctgatatttagtgtg 196

                                               
Query: 121 catgtgcgtgtgtgtgtatgtgtgtgtgtgtgtgtg 156
           ||||  ||||||||||| ||||||||||||||||||
Sbjct: 195 catg--cgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)