BAC Information

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BAC

Clone NameMSMg01-151C17
Chromosome9 (Build37)
Map Location 92,597,822 - 92,598,160
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931
Downstream geneLOC100039944, LOC667009, LOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151C17.T7 (MSMg01no151_c17.b1)MSMg01-151C17.TJ (MSMg01no151_c17.g1)
ACCAG353408AG353409
length727745
length of high quality
(start - end)
291 (77 - 367)339 (71 - 409)
definitionCHROMAT_FILE: MSMg01no151_c17.b1 PHD_FILE: MSMg01no151_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:54 2005CHROMAT_FILE: MSMg01no151_c17.g1 PHD_FILE: MSMg01no151_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACACACACCGCG
GAATTCAGTAGGAATTCCCCAAGAAAGTTACCTATTCAGTAACTAATTAG
CATTATAAAAGACGGAGCCTACAGCTCAGGGCTAGTCTGCAAAATGTTTA
CTAGAACAGAAAGGACAGTCTTAACCAAATGAGGGTTTACCATGAGAAAA
GTTAGGAAATCCCACTGAGACAGGTTTCTTCATTAGGCCCTAAGAATGAG
CATAAATAAATTTTATGCCTCAGCCCAGCAGCCTTTCTTTTATATATTAA
CAACAGGGAGGAGATGTAACCTCCCCCTTCAGTCTGAAATCTGGCTGATC
AGGTTTGACTGTTAGTATTAATAGAGCATCTGGGGTGGAGCCTGCCACCC
TATCGTTCTGCCACTCCCACCGCTACTACCTGCCACCTAGCTGTTCCAGA
GCCAATACATGGTCACCTGAAACTGGACTCCAAGGATGATTTGGCGGGAA
TGGGCCCCTCCCCCTTCTTCATAACCCCTCGAATAGCAAAATTGAATCTC
GTTCACACTAATGTCTTGCCTCCATCTTTTCTTGCGCCGCCTAGCTCCCT
CTTTTCTTCCAGATTCCAAGACGCTTCCCTGACATGCGAGCCGCTGGTCG
GACTCACCCCACCTGCCCCCATTTTCACCCGATACCCACGTACATCCCAT
CTTACCACCCCCCTTCCCCTCCCCTTG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATTATCTACAGACCTAGTGTGTATCTATC
TATTTTTTTATTATTTTTTCTAATTTCTAAATATTATGAATAAGTACATG
GAACTAGTTTAAGGTATACACTAGATAACCATGTTATCAAATAAAAGATT
TAATAGGCATTATAAATTGTGAGCTCAGTAAATACAGCCCAGGTAAACTA
TAGAATAAGACTAGTAAGCATGAACATCTTAAATTCTGACAAAAACGTAG
TAGCATGTTAATCTCCTGTAAACCTAATATAATCTCTTTTATGAAGCAAG
AATTTGGAAGGCAGAAAAAGAAAGCTTTGTTATGCTTCTCTGTTAACCAG
AGAGCCAGAACACCCGGGTCAGTAGAATTGAAGAGGATCTGGCCAGTGCA
ATGAAAGGTGGTCTAATGGTTGCTGCTGAGCACAAGTCTCTGCAGTCCTT
CCTTCAGTCTCAGCTAGATGAGCAAAGGTGTTCCATAAGAAGCTCACTCA
CGAGACTGCTCAGCTAAAGAGTCGGATAATTGCAACCAAATTCAGATTCT
TTGCTCTCACCTGCTACCTGATGCTGGCCTCCAGAGAAACATGTCTACTA
GTTACAGGGATGTGCATTCTCTCTATCACTTGGATATGAGAACATGTTTC
CATCCAAACGTGTTTCCGTTGTCCACAAAGAATAAAATCCCAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_c17.g1 MSMg01no151_c17.g1 CHROMAT_FILE:
MSMg01no151_c17.g1 PHD_FILE: MSMg01no151_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:54 2005
         (339 letters)



>mm_chr9_92597555_92598293
          Length = 739

 Score =  632 bits (327), Expect = 0.0
 Identities = 336/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattatctacagacctagtgtgtatctatctatttttttattattttttctaatttctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cattatctacagacctagtgtgtatctatctatttttttattattttttctaatttctaa 547

                                                                       
Query: 61  atattatgaataagtacatggaactagtttaaggtatacactagataaccatgttatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atattatgaataagtacatggaactagtttaaggtatacactagataaccatgttatcaa 487

                                                                       
Query: 121 ataaaagatttaataggcattataaattgtgagctcagtaaatacagcccaggtaaacta 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ataaaatatttaataggcattataaattgtgagctcagtaaatacagcccaggtaaacta 427

                                                                       
Query: 181 tagaataagactagtaagcatgaacatcttaaattctgacaaaaacgtagtagcatgtta 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 426 tagaataagactagtaagcatgaacatcttaaattctggcaaaaacgtagtagcatgtta 367

                                                                       
Query: 241 atctcctgtaaacctaatataatctcttttatgaagcaagaatttggaaggcagaaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atctcctgtaaacctaatataatctcttttatgaagcaagaatttggaaggcagaaaaag 307

                                                  
Query: 301 aaagctttgttatgcttctctgttaaccagagagccaga 339
           ||||||||||||||||||||||||||||| |||||||||
Sbjct: 306 aaagctttgttatgcttctctgttaaccacagagccaga 268


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)