Query= MSMg01no151_d09.b1 MSMg01no151_d09.b1 CHROMAT_FILE:
MSMg01no151_d09.b1 PHD_FILE: MSMg01no151_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:57 2005
(627 letters)
>mm_chr9_49276689_49277715
Length = 1027
Score = 936 bits (484), Expect = 0.0
Identities = 529/562 (94%), Gaps = 28/562 (4%)
Strand = Plus / Minus
Query: 5 gaattcagaaggatcctttaaatgtaagctattaatacaatggttacttttctttcactt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gaattcagaaggatcttttaaatgtaagctattaatacaatggttacttttctttcactt 503
Query: 65 tcggcattgaatttggtcttggaaaatgtctacctactgatgcccactcgagctagtctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcggcattgaatttggtcttggaaaatgtctacctactgatgcccactcgagctagtctc 443
Query: 125 cctgaagtgattagaaagcagtggagttgaattgcttttaaaatgttatgtaattcagac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cctgaagtgattagaaagcagtggagttgaattgcttttaaaatgttatgtaattcagac 383
Query: 185 tcatatctagtgcaggctgtccatcccccactccagttcatctaaattagttacttgcat 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcatatctagtgcaggctgtccgtcccccactccagttcatctaaattagttacttgcat 323
Query: 245 tttaactgtattcaattttaagccaccctttgattagttataagaatctcattaaaagtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttaactgtattcaattttaagccaccctttgattagttataagaatctcattaaaagtg 263
Query: 305 gctgtgaataaatataaggcaatgcggtgaaaggctttggggaaacaacttcttccag-- 362
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 gctgtgaataaatataaggcaatgcggtgaaaggctttggggaagcaacttcttccagct 203
Query: 363 --------------------------ctctctctctctctctctctcagagcatacattc 396
||||||||||||||||||||||||||||||||||
Sbjct: 202 ctctctctctctctctctctctctctctctctctctctctctctctcagagcatacattc 143
Query: 397 agaggcaaatagacacagaacatgctgcctggtattaggaatcacttgagccgcagacta 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 agaggcaaatagacacagaacatgctgcctggtattaggaatcacttgagccgcagacta 83
Query: 457 tttttaaaacacctctcccgtttgcatgtggtgctagaaaacagtaaggatgctgggaat 516
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 82 tttttaaaacacctctcccatttgcatgcggtgctagaaaacagtaaggatgctgggaat 23
Query: 517 tgaatattgcttgctaaagaaa 538
||||||||||||||||||||||
Sbjct: 22 tgaatattgcttgctaaagaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no151_d09.g1 MSMg01no151_d09.g1 CHROMAT_FILE:
MSMg01no151_d09.g1 PHD_FILE: MSMg01no151_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:57 2005
(607 letters)
>mm_chr9_49105436_49106441
Length = 1006
Score = 1089 bits (563), Expect = 0.0
Identities = 596/607 (98%), Gaps = 1/607 (0%)
Strand = Plus / Plus
Query: 1 aatagaacacagcagaaagccaagcctgggaaacacaaactttcatgtctacaccctact 60
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 201 aatagaacacagcagaaagccaagcctgggagacacaaactttcatgtctacgccctact 260
Query: 61 gtgctgagactcctccatgaaccaccaaatgccattcttgtcagggtccctagacaatgg 120
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgctgagactcctctatgaaccaccaaatgccattcttgtcagggtccctagacaatgc 320
Query: 121 catggcgagaagtgaatcttgaattttcacatgcattgagcaatgtgcaatcttcccctc 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 catgtcgagaagtgaatcttgaattttcacatgcattgagcaatgtgcaatctt-ccctc 379
Query: 181 cgtcagagcagaagtcagtcagagagaggctttgcaggacgaccgttgggccacatttct 240
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtcagagcagaagtcagtcagcgagaggctttgcaggacgaccgttgggccacatttct 439
Query: 241 cgctagctttgacacatgaggacctttgatttagtattcctttcccaaggaatttattca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cgctagctttgacacatgaggacctttgatttagtattcctttcccaaggaatttattca 499
Query: 301 cagaatgttgatggagtactatttatgtgttggcattgcttccaccacattgaccttatt 360
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 500 cagaatgttgatggagtactatttatgtgttggcattgcttccagtagattgaccttatt 559
Query: 361 caataggcagatattatcccttccttgatggaccttacaagtcagtgaaaaggaaagaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caataggcagatattatcccttccttgatggaccttacaagtcagtgaaaaggaaagaaa 619
Query: 421 gggatactactacccctgaagtttgctttaagacagtggttctaaaccttcttaatgctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gggatactactacccctgaagtttgctttaagacagtggttctaaaccttcttaatgctg 679
Query: 481 agaccctttaatgctttactgcttcgtgttgtggtgaccataaaatccatttcattgcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agaccctttaatgctttactgcttcgtgttgtggtgaccataaaatccatttcattgcta 739
Query: 541 cttcacatctgtaattttattattgtcatgaatcatactgtaaacacttctagaaaggtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cttcacatctgtaattttattattgtcatgaatcatactgtaaacacttctagaaaggtt 799
Query: 601 tgtcgaa 607
|||||||
Sbjct: 800 tgtcgaa 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space: 594612
Effective search space used: 594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
