BAC Information

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BAC

Clone NameMSMg01-151M21
Chromosome9 (Build37)
Map Location 105,504,422 - 105,504,759
singlet/doubletsinglet
Overlap genenone
Upstream geneCpne4, Mrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1, Atp2c1, EG434434, LOC664981
Downstream genePik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151M21.T7 (MSMg01no151_m21.b1)MSMg01-151M21.TJ (MSMg01no151_m21.g1)
ACCAG353864AG353865
length739741
length of high quality
(start - end)
341 (79 - 419)394 (73 - 466)
definitionCHROMAT_FILE: MSMg01no151_m21.b1 PHD_FILE: MSMg01no151_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:43 2005CHROMAT_FILE: MSMg01no151_m21.g1 PHD_FILE: MSMg01no151_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGAAGCCATTATCTCCTATCATCTCACCAAGAAGCAAAACAT
GAAAAGATAAACACAAACTTGTTACCCTGAGAGTAACCAGGCAAGGGGAC
AATCTGAAGTCTTTAGATGGTGTAAAACAAAGTTAAATTTCACATCTGCA
TTTTAGAATACATGCATGTCCTACTTGGCTTTTCTGTTGCTGTAACAAAA
TACTCTGACCTCTAAAAGTTACTTGGGAAATAAAGGGTTAATTTCCTCTT
ACTCTTCTGAATTACAGCCTCCTCTGCCCCAGAGCCCCCATTGATGGAGG
TCAAGGTAGGAACCTATAGACAAGAACCTAAGCAGAGACCAAGGGATAAT
GTTTACTGGCTTACTCCCAGGACCCCTCATAGTTAGGTGCCTTTCTTATA
CATCTCAGGCTCATCTGCCCAGTGACTTTTATCACCCTTTGCCGGCTAAG
CCTCCTTACATCCCTTGTCACCTAAGAGAGCCCCCCCCCCCCCGGTCACA
CTGATGCAAACAATGCCTCAGTACTATGGCGACCTCCCCATAACCCCCCG
GCTGTATCAAGTCGACCCGTCCAGCCCATTCCCGAGAACATCTGCCTGTC
CCTCCCAACCCCCCTTAGCCCCAATATACCCACCCCCTTACTCGCCTTAC
TTGCCACTACTACCCCACCCCCATACCCTCACCCCTCTG
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATATGTAGACTTCTGGAAAACGTAATTT
TATTGTTGTGCTGGGGTTTCTTTTATCACCTTAACAGGGCTAGTGTCATC
TGGTAAAATGGAAGGCTCAACTGAGAAAATGTCTCCATCACATAGACCTA
CCTACAGTCAAGTCTGTGGAGAATTTTCTCAAGTGATTGATGCGGGAGTG
CCGGGATCACTGTGGACAGGGCTATCCATGGACAGGTGGTCCTGGGTTAG
GTAAGATGGCAAACTGAGGGACCCGTGAGAAGCAAGCCAGGAAGCAGTGC
TCCTCCATGGGCTCCGCCTTCAGTTTCTGCCTCCAGGTTCCCACTTTGGA
TTGCTTCAGCGATGGAAAGTATAAGCCTTTCCTTCCCTAGCTGCTTCTGA
TGTCTTGGGACAGCAAAAGAAAAGAAAACTAGGACATCTGTATTGTTAGT
TATTGGACCAATTACCTGAAACGATGCGCGTGTTGCTTAAGATGGTTTTT
CTATTCTGTACCAGATCTGATCACCGGCCCACACTAGCCGAGATCAGCAA
CATTGACTTCTATTTCCTGCGACCAACAGCTAGCCACTATTATGTATCCG
CCTATAACTTACCATATTAAAGCCTCAACCACCACCTGCTAAACCCAGAG
AACCATGCCCCTCCTCCTTTTTTTCGTGTCTGTTGCCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_m21.b1 MSMg01no151_m21.b1 CHROMAT_FILE:
MSMg01no151_m21.b1 PHD_FILE: MSMg01no151_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:43 2005
         (341 letters)



>mm_chr9_105504422_105505162
          Length = 741

 Score =  654 bits (338), Expect = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctcaccaagaagcaaaacatgaaaagataaacacaaacttgttaccctgagagtaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atctcaccaagaagcaaaacatgaaaagataaacacaaacttgttaccctgagagtaacc 279

                                                                       
Query: 61  aggcaaggggacaatctgaagtctttagatggtgtaaaacaaagttaaatttcacatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aggcaaggggacaatctgaagtctttagatggtgtaaaacaaagttaaatttcacatctg 219

                                                                       
Query: 121 cattttagaatacatgcatgtcctacttggcttttctgttgctgtaacaaaatactctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 cattttagaatacatgcatgtcctacttggcttttctgttgctgtaacaaaatactctga 159

                                                                       
Query: 181 cctctaaaagttacttgggaaataaagggttaatttcctcttactcttctgaattacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 cctctaaaagttacttgggaaataaagggttaatttcctcttactcttctgaattacagc 99

                                                                       
Query: 241 ctcctctgccccagagcccccattgatggaggtcaaggtaggaacctatagacaagaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  ctcctctgccccagagcccccattgatggaggtcaaggtaggaacctatagacaagaacc 39

                                                 
Query: 301 taagcagagaccaagggataatgtttactggcttactc 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  taagcagagaccaagggataatgtttactggcttactc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)