BAC Information

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BAC

Clone NameMSMg01-151O20
Chromosome9 (Build37)
Map Location 113,680,063 - 113,765,828
singlet/doubletdoublet
Overlap geneClasp2
Upstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680, Pdcd6ip
Downstream geneUbp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151O20.T7 (MSMg01no151_o20.b1)MSMg01-151O20.TJ (MSMg01no151_o20.g1)
ACCAG353956AG353957
length748699
length of high quality
(start - end)
506 (47 - 552)264 (73 - 336)
definitionCHROMAT_FILE: MSMg01no151_o20.b1 PHD_FILE: MSMg01no151_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:52 2005CHROMAT_FILE: MSMg01no151_o20.g1 PHD_FILE: MSMg01no151_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,765,494 - 113,765,828)(113,680,063 - 113,680,326)
sequence
AACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACAGCATCCGCGGA
ATTCTCTAAGTTTAGACATGATAAACAAGGTTCAATACAGAATAAAGCAG
AGCCCACTAGTCATGTGTCTCATGAGGACAGAGGTTGGGTGTGTGCTGCC
ATGCCCAGCTTTTAGGTAAGTGCGCAAACTTTTTATTTATTTATTCATTC
ATTCATTTATTTTGGTGGTGTGCTGCAGTTTCTTTTCTTTTCTTTTTTAA
AGATTTATTTAGTATATGTACATACACTGTAGCTGTCTTCCGACACTCCA
GAAAAGGGCATCAGATCTTGTTACAGGTGGTTGTAAGCCACCATGTGGTT
GCTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTTGGTGCCCTTAACC
ACTGAGCCATCTCCCCAACCCTAAGTGCTCAAATCTTAACTCATATCCTT
ATGCTTGTCTAGCAAGTGCTTTTACATTCTGAAAGGCATCTTCGCAATCC
TGCTTTTACTTCCTTCTATTTTATTGAAACAGTGCTTCCTTATGGAGCCT
GGCTGGCTGCTTCCCCCGTCCTGAGAGTAAAGGCCCGCAACAGTACACCT
GATTCCCCCTTCTTTTTCTTCCCTCTCTTCCTCCTCCTTCCCCCCTCCGC
GCCCTCCTTACCCCACCAGCTCCTCTCCACCTCACTCCCCTACGCCTGAC
TCATCCCTCCTCGCCCACCCCCTTACCGTTGATCCCACCTCCCCCCCC
CGATGAAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACCTAGACTTCAGAACGTTAGTAAACA
GAAATATCTCTTAACTTACTTCATCTCACTGTATATTAAGACTCAACTCA
GATTTTTTTTTTAAGTAATTGATAGGCTGCCAGGGTTGTCAAACTGCTGT
TGAGAATTTTGCCCAGTTGGGTCATGTGCTGACCTTCATTTTCAACATCT
GTCCCGATTAGTTTTATGTCAATTTGACACAAGCCATAGTCATCTGAAAG
GAGGGATCAGTTGGGAAAATACTTCATAAGATCTGGCTGTAAGGCAGTTT
TTTAGTTAGCGATTGATAGTTGAGGGTCCAGCTCATTATGGGTGGTCCCA
TCCCTGGCTGGTTGCCCCACCCCTCTATAAGAGAGCAGGCTGAGCAACGC
CCTGGGTGCAAGCCAGTAAGCAGGACCCTTGATGCGCTCTTGTGTCAGCC
CCTGCCTCCAGGTTCCCGTCCTGTCTGTTTCATGGTCCCACGCACTAGTC
ATCCTAACTAGGACTGCATCAAATGCCTGCTAGGATCTACTTTGTGTCCC
TCAGCTTTCGCCTGTACTCATCTTTCCTTACCACACTGTGACCATGCTTT
CTGTACTGAGATGAGAACAAAGGCTAGGCCGGAAATGTCAGCACACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_o20.b1 MSMg01no151_o20.b1 CHROMAT_FILE:
MSMg01no151_o20.b1 PHD_FILE: MSMg01no151_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:52 2005
         (506 letters)



>mm_chr9_113765494_113766399
          Length = 906

 Score =  617 bits (319), Expect = 0.0
 Identities = 331/335 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattctctaagtttagacatgataaacaaggttcaatacagaataaagcagagcccact 62
           |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 335 gaattctctaagttcagacatgataaacaaggttcaatacagaagaaagcagagcccact 276

                                                                       
Query: 63  agtcatgtgtctcatgaggacagaggttgggtgtgtgctgccatgcccagcttttaggta 122
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 275 agtcatgtgtctcatgaggacagaggttgggtgtgtgctaccatgcccagcttttaggta 216

                                                                       
Query: 123 agtgcgcaaactttttatttatttattcattcattcatttattttggtggtgtgctgcag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 215 agtgcgcaaactttttatttatttattcattcattcatttattttggtgctgtgctgcag 156

                                                                       
Query: 183 tttcttttcttttcttttttaaagatttatttagtatatgtacatacactgtagctgtct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tttcttttcttttcttttttaaagatttatttagtatatgtacatacactgtagctgtct 96

                                                                       
Query: 243 tccgacactccagaaaagggcatcagatcttgttacaggtggttgtaagccaccatgtgg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  tccgacactccagaaaagggcatcagatcttgttacaggtggttgtaagccaccatgtgg 36

                                              
Query: 303 ttgctgggatttgaactcaggaccttcagaagagc 337
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  ttgctgggatttgaactcaggaccttcagaagagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no151_o20.g1 MSMg01no151_o20.g1 CHROMAT_FILE:
MSMg01no151_o20.g1 PHD_FILE: MSMg01no151_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:52 2005
         (264 letters)



>mm_chr9_113679863_113680526
          Length = 664

 Score =  511 bits (264), Expect = e-149
 Identities = 264/264 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctagacttcagaacgttagtaaacagaaatatctcttaacttacttcatctcactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacctagacttcagaacgttagtaaacagaaatatctcttaacttacttcatctcactgt 260

                                                                       
Query: 61  atattaagactcaactcagattttttttttaagtaattgataggctgccagggttgtcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atattaagactcaactcagattttttttttaagtaattgataggctgccagggttgtcaa 320

                                                                       
Query: 121 actgctgttgagaattttgcccagttgggtcatgtgctgaccttcattttcaacatctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgctgttgagaattttgcccagttgggtcatgtgctgaccttcattttcaacatctgt 380

                                                                       
Query: 181 cccgattagttttatgtcaatttgacacaagccatagtcatctgaaaggagggatcagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccgattagttttatgtcaatttgacacaagccatagtcatctgaaaggagggatcagtt 440

                                   
Query: 241 gggaaaatacttcataagatctgg 264
           ||||||||||||||||||||||||
Sbjct: 441 gggaaaatacttcataagatctgg 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)