BAC Information

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BAC

Clone NameMSMg01-152E20
Chromosome9 (Build37)
Map Location 26,801,098 - 26,913,686
singlet/doubletdoublet
Overlap geneAcad8, Thyn1, Vps26b, Ncapd3, Jam3
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907
Downstream geneIgsf9b, Spata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152E20.T7 (MSMg01no152_e20.b1)MSMg01-152E20.TJ (MSMg01no152_e20.g1)
ACCAG354224AG354225
length728692
length of high quality
(start - end)
651 (46 - 696)472 (101 - 572)
definitionCHROMAT_FILE: MSMg01no152_e20.b1 PHD_FILE: MSMg01no152_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:22 2005CHROMAT_FILE: MSMg01no152_e20.g1 PHD_FILE: MSMg01no152_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,801,098 - 26,801,744)(26,913,274 - 26,913,686)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGAATGCTTCCTGTCTTAACTACTATGATATGACTCAGTACCT
GCTTCATTTCTTGGACTGAGAAAAATGAAACTTGAGAGAATGACCTGTAA
AGTCATGATGTTAAATAGGATAGACGGATGGGAAATTTTTCTAGAAACTC
CTAAAATGTACAAACACTCCATTGTAACAGAATCTCTGCAGAGGAAATGG
TGGGAGACGCTACCTACCTATACATCATAAGTAACCTGGTCCCCTAGCAG
TAAAGCACAGAATTGAATTTTTACAAATATTCTCAAAGGTAAGGTAAACA
TTCAGTAAGGATGGTAGGATTGAATTGGAAAACAAGAGTGTCAGGAAAGC
CTAGAGTATTTTCCATATTTTTTAAGATAAAGCAGATTTCCAGAGACAAG
GCAGACACTAAAAACAATGAACTTAGGCAACACTGTGAAAAAGTAATGAC
TTTTTAAGACGGGAAAAGAAGACAGAATGAATTCCAGAAGCCAGAGCACT
GAAGCAGAACCAGCAACTCATAGATGATTGCACAGGCCTATACTATTCCC
ATTCCTTTCTCTTCTACTGTGAGAACCACTGCCTCGGGTGTGCTGGTGCA
AAGCAAAGGAAAGAATGAGTGCATACCGACTACACTTGGAGGTCCAGTAA
AAATCAGGATACAGTGATGGCTCAGGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATAGAGACAAGGCTGGCCTGG
AACTCACAGAGGTCTGTCTGTCTGTCTCTGCCTTCCAAGTGCTGGGATTA
AAAGTGTGCACCACCACACCCTGTCTATTATCATCTAAAAAATATTTATT
TGTGACTGTGAGCCTATGTACACAGGAGGATACTGCAGAGGTCAGAAGAG
GGCCCCAGGTCTCTAGGAGATGGAGTATAGATAGTTGTGTGCTGGAAATT
GAACTGCTAGCTGCAAGAGCAGTCAGTGCTCTTAGCCACTGAGCCGGCCC
TCCAGCCCCTACTTCCCTGTATGGACTAGCCAAGAATGTTCAGGATGGCT
GTTGTGTTGGGTAGACTAGCAACACACTCTGCAGGTTACATTGGCTGTCA
TCTGTTTCCTGCCTATCCTTGTATCTATACAACAAAGAAAGCTCATATAA
TAGATACGGGTGTCTAAGGGAAGGTGTGTTCTCTGTAGTGAAATCCTTAC
TAATTTTTTCATTGGTTTTTCTGGCAGAAACTCATCTTGGAAAGTTTAAG
CTTATAAGTTTAAGCTTATCTTTCTCTCATTGCTCTCCAGGTGTGGAATT
GTCTTGCATCATTACGGACTCACAGACAAGTGACCCTAGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_e20.b1 MSMg01no152_e20.b1 CHROMAT_FILE:
MSMg01no152_e20.b1 PHD_FILE: MSMg01no152_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:22 2005
         (651 letters)



>mm_chr9_26800894_26801944
          Length = 1051

 Score = 1212 bits (627), Expect = 0.0
 Identities = 642/647 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagaatgcttcctgtcttaactactatgatatgactcagtacctgcttcattt 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagaaagtttcctgtcttaactactatgatatgactcagtacctgcttcattt 264

                                                                       
Query: 65  cttggactgagaaaaatgaaacttgagagaatgacctgtaaagtcatgatgttaaatagg 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 cttggactgagaaaaatgaaacttgaaagaatgacctgtaaagtcatgatgttaaatagg 324

                                                                       
Query: 125 atagacggatgggaaatttttctagaaactcctaaaatgtacaaacactccattgtaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 atagacggatgggaaatttttctagaaactcctaaaatgtacaaagactccattgtaaca 384

                                                                       
Query: 185 gaatctctgcagaggaaatggtgggagacgctacctacctatacatcataagtaacctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaatctctgcagaggaaatggtgggagacgctacctacctatacatcataagtaacctgg 444

                                                                       
Query: 245 tcccctagcagtaaagcacagaattgaatttttacaaatattctcaaaggtaaggtaaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcccctagcagtaaagcacagaattgaatttttacaaatattctcaaaggtaaggtaaac 504

                                                                       
Query: 305 attcagtaaggatggtaggattgaattggaaaacaagagtgtcaggaaagcctagagtat 364
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 505 attcagtaaggatggtaggattgaattggaaaacaagagtgtcacgaaagcctagagtat 564

                                                                       
Query: 365 tttccatattttttaagataaagcagatttccagagacaaggcagacactaaaaacaatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttccatattttttaagataaagcagatttccagagacaaggcagacactaaaaacaatg 624

                                                                       
Query: 425 aacttaggcaacactgtgaaaaagtaatgactttttaagacgggaaaagaagacagaatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aacttaggcaacactgtgaaaaagtaatgactttttaagacgggaaaagaagacagaatg 684

                                                                       
Query: 485 aattccagaagccagagcactgaagcagaaccagcaactcatagatgattgcacaggcct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aattccagaagccagagcactgaagcagaaccagcaactcatagatgattgcacaggcct 744

                                                                       
Query: 545 atactattcccattcctttctcttctactgtgagaaccactgcctcgggtgtgctggtgc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atactattcccattcctttctcttctactgtgagaaccactgcctcgggtgtgctggtgc 804

                                                          
Query: 605 aaagcaaaggaaagaatgagtgcataccgactacacttggaggtcca 651
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaagcaaaggaaagaatgagtgcataccgactacacttggaggtcca 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no152_e20.g1 MSMg01no152_e20.g1 CHROMAT_FILE:
MSMg01no152_e20.g1 PHD_FILE: MSMg01no152_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:22 2005
         (472 letters)



>mm_chr9_26912815_26913686
          Length = 872

 Score =  768 bits (397), Expect = 0.0
 Identities = 409/413 (99%)
 Strand = Plus / Minus

                                                                       
Query: 60  accaccacaccctgtctattatcatctaaaaaatatttatttgtgactgtgagcctatgt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 accaccacaccctgtctattatcatctaaaaaatatttatttgtgactgtgagcctatgt 813

                                                                       
Query: 120 acacaggaggatactgcagaggtcagaagagggccccaggtctctaggagatggagtata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 acacaggaggatactgcagaggtcagaagagggccccaggtctctaggagatggagtata 753

                                                                       
Query: 180 gatagttgtgtgctggaaattgaactgctagctgcaagagcagtcagtgctcttagccac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gatagttgtgtgctggaaattgaactgctagctgcaagagcagtcagtgctcttagccac 693

                                                                       
Query: 240 tgagccggccctccagcccctacttccctgtatggactagccaagaatgttcaggatggc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tgagccggccctccagcccctacttccctgtatggactagccaagaatgttcaggatggc 633

                                                                       
Query: 300 tgttgtgttgggtagactagcaacacactctgcaggttacattggctgtcatctgtttcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tgttgtgttgggtagactagcaacacactctgcaggttacattggctgtcatctgtttcc 573

                                                                       
Query: 360 tgcctatccttgtatctatacaacaaagaaagctcatataatagatacgggtgtctaagg 419
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 572 tgcctatccttgtatctatacaacaaagaaagctcatataatagatgcaggtgtctaagg 513

                                                                
Query: 420 gaaggtgtgttctctgtagtgaaatccttactaattttttcattggtttttct 472
           ||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 512 gaaggtgtgctctctgtagtgaaatccttactaatgttttcattggtttttct 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)