BAC Information

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BAC

Clone NameMSMg01-155D03
Chromosome9 (Build37)
Map Location 80,039,342 - 80,039,969
singlet/doubletsinglet
Overlap geneMyo6
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249
Downstream geneImpg1, EG666534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155D03.T7 (MSMg01no155_d03.b1)MSMg01-155D03.TJ (MSMg01no155_d03.g1)
ACCAG356277AG356278
length744750
length of high quality
(start - end)
632 (45 - 676)409 (78 - 486)
definitionCHROMAT_FILE: MSMg01no155_d03.b1 PHD_FILE: MSMg01no155_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:03 2005CHROMAT_FILE: MSMg01no155_d03.g1 PHD_FILE: MSMg01no155_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTCCTTGGTTTTCCTAAGGAAATGCTCTTTAAAAAAACACACAC
ACCATAAAATTGTAAATATTACTTATGAACCCAGTTGAACTGCTGTAATC
CCAGCATTCAGAAGACAGAGGCAGGCAGATCTCCTTTAAGGATACCCTGG
CCTACAAAGCAAGTTCCAGGCTAGCCAGGGCTACTTTTTTTTTTTCCTCA
ATAAAATAAAATTAAAAAGTCACGTAAGACACTACAACCATTCCCTGGCA
GAGCAGGGAAGATGTCCAATGGAAACTAAGAGTGGCAGTAACTTATTCTA
AGCTAGAAACTTCCACCCTGCTGACTAACCACGTTTATAGAAGCTACTAT
ACGGGCAGCTCAGGGAGAGAAGCCTGCAATGGTCTCTCCCAGCTTGAGTC
TTACATGTTACAATACCAACCTGCTAAGAGTGCAGTATTTTGACACAATG
TTATAGAGGCAATGCAGAGACTCCTGGCTGCTCAAGGTGTCAGAGAAGTG
GCAGTTGAGTGCTGAACTTTAAACAGGACACCCATATCACCCCCTTCCAA
GGCTCAAGAAAGTAGGGGCAGAGAGAACAGAAAAGCCCAAGCACAAGGAA
GGCTGCAAAAGCTGCCTTCCTTCCATACAGGGCGCTGCCCCGGCATCCAT
AACCTCCGAACAGCTGTGGCAGCACAAGAACACCCCAGTAAATN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGATCCTGCTAAGTCACTGTTCT
ATGCGGTGAAGAGATACCATGACCAAGACAACTCTTTTCAAAGAAAGCAA
TTAATTGGGGGTTTACTTATACTTTTAGGTTAATCTATGATTATCATGAT
AGGAAGCAGACATGGCAGTAAAGCAGTAACTGAGAGCTTTTCAACCTAAC
CCCACAGGTGGTAGATAGACAGGAGGGAGGGAGGGAAGGAGGGAGAGAGA
CAGACAGACAGACAGACAGACAGGCAGACAGGCTGGGCCTTGCTTGGGTT
TTGAGACCTCAAATACCAGCCCTAGCAACGCCATGCCTCCTAATCTTTCC
CAAACAGTTCCACTAATTGGAGAACTGGAGATTGGGCATTCTCATTCAAA
CTATCACAGATTCCCAGAATCAATGTTAAAACAAAACAAAACCCAACAAA
ACAAAACACAGAACCCAAGCATGGTACATACCTTTAATCCTAGGGGTGGC
AAACTGCAGGCTAGCCTAGCTGGCCAAGTTCCCGGTCAAATAAAGACCCT
GTCTCGCATGGCAGAAGGCCCTTAATGACCCAGTATCTAGGTCCTCTGAC
CTCCCCCCTGTGCAGACCCGGAACCCTATAACATTTCCCCCCTCCCCGAC
CGCAAGATTACAACCCATTACTACCCCAGCGCGGCATCTCTGTGTTGCTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_d03.b1 MSMg01no155_d03.b1 CHROMAT_FILE:
MSMg01no155_d03.b1 PHD_FILE: MSMg01no155_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:03 2005
         (632 letters)



>mm_chr9_80039118_80040149
          Length = 1032

 Score = 1116 bits (577), Expect = 0.0
 Identities = 616/629 (97%), Gaps = 2/629 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttccttggttttcctaaggaaatgctctttaaaaaaacacacacaccataaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gaattcatttccttggttttcctaaggaaatgctctttaaaaaaacacacacaccataaa 793

                                                                       
Query: 65  attgtaaatattacttatgaacccagttgaactgctgtaatcccagcattcagaagacag 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 792 attgtaaatattacttatgaacccagttgaactgctgtaatcccagcaatcagaagacag 733

                                                                       
Query: 125 aggcaggcagatctcctttaaggataccctggcctacaaagcaagttccaggctagccag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aggcaggcagatctcctttaaggataccctggcctacaaagcaagttccaggctagccag 673

                                                                       
Query: 185 ggctactttttttttttcctcaataaaataaaattaaaaagtcacgtaagacactacaac 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 672 ggctactttttttttttcctcaataaaataaaattaaaaagtcacataagacactacaac 613

                                                                       
Query: 245 cattccctggcagagcagggaagatgtccaatggaaactaagagtggcagtaacttattc 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cattccctgacagagcagggaagatgtccaatggaaactaagagtggcagtaacttattc 553

                                                                       
Query: 305 taagctagaaacttccaccctgctgactaaccacgtttatagaagctactatacgggcag 364
           |||| |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 552 taaggtagaaatttccatcctgctgactaaccatgtttatagaagctactatacgggcag 493

                                                                       
Query: 365 ctcagggagagaagcctgcaatggtctctcccagcttgagtcttacatgttacaatacca 424
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 492 ctcagggagagaagcctgcaatggtctctcctagcttgagtcttacttgttacaatacca 433

                                                                       
Query: 425 acctgctaagagtgcagtattttgacacaatgttatagaggcaatgcagagactcctggc 484
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 acctgctaagagtacagtattttgacacaatgttatagaggcaatgcagagactcctggc 373

                                                                       
Query: 485 tgctcaaggtgtcagagaagtggcagttgagtgctgaactttaaacaggacacccatatc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgctcaaggtgtcagagaagtggcagttgagtgctgaactttaaacaggacacccatatc 313

                                                                       
Query: 545 acccccttccaaggctcaa-gaaagtaggggcagagagaacagaaaagcccaagcacaag 603
           ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 312 acccccttccaaggctcaaggaaa-taggggcagagagaacagaaaagcccaaacacaag 254

                                        
Query: 604 gaaggctgcaaaagctgccttccttccat 632
           |||||||||||||||||||||||||||||
Sbjct: 253 gaaggctgcaaaagctgccttccttccat 225


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)