Query= MSMg01no155_d23.b1 MSMg01no155_d23.b1 CHROMAT_FILE:
MSMg01no155_d23.b1 PHD_FILE: MSMg01no155_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:07 2005
(539 letters)
>mm_chr9_92176608_92177547
Length = 940
Score = 978 bits (506), Expect = 0.0
Identities = 528/540 (97%), Gaps = 10/540 (1%)
Strand = Plus / Plus
Query: 1 ttaatgtgttgtgtttactctgcatgtttcaagcatattatcttgacactgtgcactggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ttaatgtgttgtgtttactctgcatgtttcaagcatattatcttgacactgtgcactg-- 267
Query: 61 ttttttttgtttttgtttttgtttttgtttgttttcttttatcctttaagctaatatgta 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 268 -tttttttgtttttgtttttgttt------gttttcttttatcctttaagctaatatgta 320
Query: 121 tgtgctccttcctgaattgcaggcttgcaaatggaggctcctcgctcaggaacatacttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgctccttcctgaattgcaggcttgcaaatggaggctcctcgctcaggaacatacttg 380
Query: 181 ccagctgggtatgcccctcagtatcctccagcagcagtccaaggtaaagcagtcattgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagctgggtatgcccctcagtatcctccagcagcagtccaaggtaaagcagtcattgaa 440
Query: 241 gaagaaaaatattatcgatcaattgatgtccccaagagagagagagaaagattaagcgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagaaaaatattatcgatcaattgatgtccccaagagagagagagaaagattaagcgat 500
Query: 301 catgccttcatttttattaattttttttcttaaacttgcgtcaaagaaacgctgggggcc 360
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 catgccttcacttttattaattttttttcttaaacttgcgtcaaagaaacactgggggcc 560
Query: 361 taggttttgttttgttttagaataagcattttttttc-gatgaattaattcttatttata 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 taggttttgttttgttttagaataagcattttttttccgatgaattaattcttatttata 620
Query: 420 aaggagcatgaatgatatgacaaactaatagaaccaatgagtatatatttactcatgaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggagcatgaatgatatgacaaactaatagaaccaatgagtatatatttactcatgaaa 680
Query: 480 tataagattgaaaataaattaaatcttgatagataataagtaaaatcttttattggctgt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tataagattgaaaataaattaaatcttgatagataataagtaaaatcttttattggctgt 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 940
Length adjustment: 10
Effective length of query: 529
Effective length of database: 930
Effective search space: 491970
Effective search space used: 491970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_d23.g1 MSMg01no155_d23.g1 CHROMAT_FILE:
MSMg01no155_d23.g1 PHD_FILE: MSMg01no155_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:07 2005
(544 letters)
>mm_chr9_92224254_92225197
Length = 944
Score = 1017 bits (526), Expect = 0.0
Identities = 536/544 (98%), Gaps = 8/544 (1%)
Strand = Plus / Minus
Query: 1 attaactctgtccatagagaaggacaggtgtgagcactcttccccttttctctatttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 attaactctgtccatagagaaggacaggtgtgagcactcttccccttttctctatttatt 518
Query: 61 agtttatctttgttatagttggttgtgtggtttagaattcagtggtggtaaaatgaactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agtttatctttgttatagttggttgtgtggtttagaattcagtggtggtaaaatgaactg 458
Query: 121 actttaatcaagtcatgaaagtcaaacttagatcttttcaaattgcctttttcagctaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 actttaatcaagtcatgaaagtcaaacttagatcttttcaaattgcctttttcagctaag 398
Query: 181 taacctccttaacaattttgagtacacgtttacacaaatcctaattaaggtccggtcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 taacctccttaacaattttgagtacacgtttacacaaatcctaattaaggtccggtcatg 338
Query: 241 tcaatcatttcaggatctattcactgttattcagaaccaaatgacagttataaaaatact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcaatcatttcaggatctattcactgttattcagaaccaaatgacagttataaaaatact 278
Query: 301 cctcagcactaagtaacacatatttctgtaggcttcattttatttaaacccagggaatag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cctcagcactaagtaacacatatttctgtaggcttcattttatttaaacccagggaatag 218
Query: 361 atgtaaataataaatcaacagacatgcacacacatacaaacacacacacacacacacaca 420
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 217 atgtaaataataaatcaacagacatgcacacacatacaa--------acacacacacaca 166
Query: 421 cacacacacataatatttttttctgggaagcacatcaaagttggcttccagtgggaaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cacacacacataatatttttttctgggaagcacatcaaagttggcttccagtgggaaaat 106
Query: 481 aattttcaggttgcctccatagtcaagaactacgaaatgctccaagaaacaaaggactgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 aattttcaggttgcctccatagtcaagaactacgaaatgctccaagaaacaaaggactgt 46
Query: 541 ttct 544
||||
Sbjct: 45 ttct 42
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
