BAC Information

Click to search

BAC

Clone NameMSMg01-155F12
Chromosome9 (Build37)
Map Location 73,781,655 - 73,782,246
singlet/doubletsinglet
Overlap genenone
Upstream genePygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
Downstream geneWdr72, Nr1h2-ps, LOC100040764, Onecut1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155F12.T7 (MSMg01no155_f12.b1)MSMg01-155F12.TJ (MSMg01no155_f12.g1)
ACCAG356377AG356378
length718723
length of high quality
(start - end)
486 (68 - 553)596 (78 - 673)
definitionCHROMAT_FILE: MSMg01no155_f12.b1 PHD_FILE: MSMg01no155_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:14 2005CHROMAT_FILE: MSMg01no155_f12.g1 PHD_FILE: MSMg01no155_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAACAATGT
TAAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAATCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGTGAGGATGTGGAGAAAGAGGAATACTCCTCCATTGTTGGTGG
GATTGCAATCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAG
ACATAGTACTACCGGAGGATCTTACAATACCTCTCCTGAGCATATATTCA
GAAGATGTTCCAATTGGTTAGAAGGATACATGCTCCACTATGTTCATTGC
AGCCTTATTTATAATAACCAGAAGGTGGAAAGAACCCAGATGCCCCTCAA
CAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATACTAC
TCAGTTATTAAAAACCATGAATTTATGAAATTCCTAGGCAAACGGATGGA
CCTGGAGGGCATCCTCCTGAGTGAGGTAACCCAATCACAAAAGAACTCAC
ATGATGTGTACTCACTGATAAGTGGATATTAGCCCCGAAACTTACAATAC
CTAACAAACAAGATACAATTTGCCAAGCACCTGTAACTCCCCAAGAACGA
AGACCACAGTGTGGATCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTCCACATTCTTCCCATTTCT
TACATTTCCCAAGGTTTATTTGTGATATGCGATGTGCGCAAAAGTGCCTA
AAAGGGAATGCAGTTCTCAGAGTTTAAATCAAAATACATTTATTGTATGA
TACTCTTTTCTAAATTATGTACTTCAGTTGAAATGCTGACAGAAGGTTTT
ATTAGGATTACTTTGAAAAGTTAATGAAATGATCATTTGAATGTGGTCAT
GTTGCCATCTCTACTCTATCTTTTTCTAAACTCACATTTACTAACAGAAA
TATAAGGATATAAGTATATTCTACCTATCCTAGGCTTCCCAAATTTACCA
TATTTATAGGATCCATGTTTGTTAAGACTTTTTCCATGCAGTCAAGACTT
ATTACACTAGAAATAACTTTTTGCTCTTGCAGGAATTCAATAATTCAGCA
TCCTTAAACAAAGATTAAAATAATCAAAATTAGTAACTATTTCCAATGAT
GAATAATCACTAAGAGATCAATGTAGACATCCAATATGACAGTGGTCAAT
CATGAGTTAAATCATATTTTAAGATTATAGTCAATTGAGCAGTGGAGACA
ATAAAGGGAATAGTACAGCTACATTAAAACTAGAGACACTAAAAGCAAAA
CATAAATGTCCAAGGCTTGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_f12.g1 MSMg01no155_f12.g1 CHROMAT_FILE:
MSMg01no155_f12.g1 PHD_FILE: MSMg01no155_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:14 2005
         (596 letters)



>mm_chr9_73781455_73782446
          Length = 992

 Score = 1122 bits (580), Expect = 0.0
 Identities = 591/596 (99%), Gaps = 4/596 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtccacattcttcccatttcttacatttcccaaggtttatttgtgatatgcgatgtgc 60
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||
Sbjct: 201 aagtccacattcttcccatttcttacatttcccaaggt--atttgtgatatg--atgtgc 256

                                                                       
Query: 61  gcaaaagtgcctaaaagggaatgcagttctcagagtttaaatcaaaatacatttattgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcaaaagtgcctaaaagggaatgcagttctcagagtttaaatcaaaatacatttattgta 316

                                                                       
Query: 121 tgatactcttttctaaattatgtacttcagttgaaatgctgacagaaggttttattagga 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 317 tgatactcttttctaaattatgtatttcagttgaaatgctgacagaaggttttattagga 376

                                                                       
Query: 181 ttactttgaaaagttaatgaaatgatcatttgaatgtggtcatgttgccatctctactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttactttgaaaagttaatgaaatgatcatttgaatgtggtcatgttgccatctctactct 436

                                                                       
Query: 241 atctttttctaaactcacatttactaacagaaatataaggatataagtatattctaccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atctttttctaaactcacatttactaacagaaatataaggatataagtatattctaccta 496

                                                                       
Query: 301 tcctaggcttcccaaatttaccatatttataggatccatgtttgttaagactttttccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcctaggcttcccaaatttaccatatttataggatccatgtttgttaagactttttccat 556

                                                                       
Query: 361 gcagtcaagacttattacactagaaataactttttgctcttgcaggaattcaataattca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gcagtcaagacttattacactagaaataactttttgctcttgcaggaattcaataattca 616

                                                                       
Query: 421 gcatccttaaacaaagattaaaataatcaaaattagtaactatttccaatgatgaataat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcatccttaaacaaagattaaaataatcaaaattagtaactatttccaatgatgaataat 676

                                                                       
Query: 481 cactaagagatcaatgtagacatccaatatgacagtggtcaatcatgagttaaatcatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cactaagagatcaatgtagacatccaatatgacagtggtcaatcatgagttaaatcatat 736

                                                                   
Query: 541 tttaagattatagtcaattgagcagtggagacaataaagggaatagtacagctaca 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tttaagattatagtcaattgagcagtggagacaataaagggaatagtacagctaca 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 992
Length adjustment: 10
Effective length of query: 586
Effective length of database: 982
Effective search space:   575452
Effective search space used:   575452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)