BAC Information

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BAC

Clone NameMSMg01-155O01
Chromosome9 (Build37)
Map Location 65,638,805 - 65,726,159
singlet/doubletdoublet
Overlap geneZfp609, Trip4
Upstream geneAI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, LOC100041180
Downstream gene2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155O01.T7 (MSMg01no155_o01.b1)MSMg01-155O01.TJ (MSMg01no155_o01.g1)
ACCAG356768AG356769
length730742
length of high quality
(start - end)
506 (44 - 549)369 (73 - 441)
definitionCHROMAT_FILE: MSMg01no155_o01.b1 PHD_FILE: MSMg01no155_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:52 2005CHROMAT_FILE: MSMg01no155_o01.g1 PHD_FILE: MSMg01no155_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,638,805 - 65,639,306)(65,725,791 - 65,726,159)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTTCTTCTTGCCTGTCAGAGGGGTGTCAGAGGGGTGAGCTCAGAGC
ATCAGACAGGAATCTACCTCCTCCATGCATCTCCTATTCCATCCTCAACC
TAACAACCTATCAATCAAGCCAAAAAGCAAGGAAGCAGACAGAGGCCAGA
AGCTCCACAGCCTTTCCTTGACATTATTACCTTTCCCATCTCCTCAGGGG
TGTTCAACAGCTCAGGGCAGCAATGGCTCCTAAGAGCCATTTCAGTCTCT
CCAGGGAACTCTGCCAAGAAGGTGTGTTAGAGCAAACCCTGATTTCATGA
AGGGAAATACACATGCTCGGCTGATAGAAATCCCTCAGTAGCAGTGCCAG
ACACTTACTTTGATAGAGAAAGTCCTGGGGTAGGGATTTTGAATATTCAA
CCCCTGATTAGCTAGTGCTCAACATGGGACAATTCGAACCAATATCACAG
ACTCCTCTTCTATTTGGAAAAGTGGTGGGTGGGGGCTGGAGAGATGGCTC
AGCGGTTAGAGCATTGTTGCTGAGTACCCAATTTCAGTTCTCAGAACCCA
CACTGCAGCTAAGAACTATCTGCAACTTCTGTTTCAGAGACTCCCATGCC
TCTTCTGGTCCCTGAACACCTGTACATAGACACATATCCGGGTAAACACC
CATTTACATAAAATAAAAATACCTAATCGT
ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAGGCCATCGTGGGAATGCATAGTGAGT
CTCTATCTGAAAAATCAATAAAACCATAGGTGAATAGTATTCTTGTTTTG
AAAGTTTTCCCTTCTACCATTATTATCCATATTCAGTCTTCAAAACGTAC
TTTTAACCAGGTTGGCCTAGTATCCCAAGCTGTTTAAATTCAAAATCTTA
CTTCCAAAAGCTCAGACCATAGTCACTACAACCTGGACAACTGAAACATT
TATAGTCAGCACAACTTGACAAGCTATATTTCTCTAAAGAAGAAAATTAA
TCTAAGATGGGATATGACAAATTTGAGTAGGCTAACATGCAAAAACATGG
GTGGAGGCGGACATGGCGGCCTCGAGCCTGCCATCCTAGTACTCAGGAGT
ACATCATGAATCATAAGGAAGGCCTTAAATTCAAGGCCACCCTGGGCTTC
ATGATGAATTCCAGGCCAGCTAGAGCTACAGTATGAGATTTTTGTCTTAT
AAAACTAACGAGTATACACTATTTTCACACGTTTGGAGAACACGCTTTAC
CCATATTATCGCAAGTGTACAAGAATATCCTGACCAGCAAGCATATGGGC
GTTCTACCTTTCCACGTAAACACGATGTTTCCTTTCCCATATTCCTTCTT
GCCTTGCTTTTGCATTTTCTCCCTTTTAACCTCCTTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_o01.b1 MSMg01no155_o01.b1 CHROMAT_FILE:
MSMg01no155_o01.b1 PHD_FILE: MSMg01no155_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:52 2005
         (506 letters)



>mm_chr9_65638601_65639506
          Length = 906

 Score =  940 bits (486), Expect = 0.0
 Identities = 498/502 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttcttcttgcctgtcagaggggtgtcagaggggtgagctcagagcatcagac 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttctccttgcctgtcagaggggtgtcagaggggtgagctcagagcatcagac 264

                                                                       
Query: 65  aggaatctacctcctccatgcatctcctattccatcctcaacctaacaacctatcaatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggaatctacctcctccatgcatctcctattccatcctcaacctaacaacctatcaatca 324

                                                                       
Query: 125 agccaaaaagcaaggaagcagacagaggccagaagctccacagcctttccttgacattat 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 agccaaaaagcaaggaagcagacagaggccagaagctccacggcctttccttgacattat 384

                                                                       
Query: 185 tacctttcccatctcctcaggggtgttcaacagctcagggcagcaatggctcctaagagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacctttcccatctcctcaggggtgttcaacagctcagggcagcaatggctcctaagagc 444

                                                                       
Query: 245 catttcagtctctccagggaactctgccaagaaggtgtgttagagcaaaccctgatttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catttcagtctctccagggaactctgccaagaaggtgtgttagagcaaaccctgatttca 504

                                                                       
Query: 305 tgaagggaaatacacatgctcggctgatagaaatccctcagtagcagtgccagacactta 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 tgaagggaaatacacatgctcggctgacagaaatccctcagtagcagtgccagacactta 564

                                                                       
Query: 365 ctttgatagagaaagtcctggggtagggattttgaatattcaacccctgattagctagtg 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtttgatagagaaagtcctggggtagggattttgaatattcaacccctgattagctagtg 624

                                                                       
Query: 425 ctcaacatgggacaattcgaaccaatatcacagactcctcttctatttggaaaagtggtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctcaacatgggacaattcgaaccaatatcacagactcctcttctatttggaaaagtggtg 684

                                 
Query: 485 ggtgggggctggagagatggct 506
           ||||||||||||||||||||||
Sbjct: 685 ggtgggggctggagagatggct 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_o01.g1 MSMg01no155_o01.g1 CHROMAT_FILE:
MSMg01no155_o01.g1 PHD_FILE: MSMg01no155_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:52 2005
         (369 letters)



>mm_chr9_65725591_65726359
          Length = 769

 Score =  675 bits (349), Expect = 0.0
 Identities = 364/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggccatcgtgggaatgcatagtgagtctctatctgaaaaatcaataaaaccataggtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 569 taggccatcgtgggaatgcatagtgagtctctatctgaaaaatcaataaaaagataggtg 510

                                                                       
Query: 61  aatagtattcttgttttgaaagttttcccttctaccattattatccatattcagtcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aatagtattcttgttttgaaagttttcccttctaccattattatccatattcagtcttca 450

                                                                       
Query: 121 aaacgtacttttaaccaggttggcctagtatcccaagctgtttaaattcaaaatcttact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaacgtacttttaaccaggttggcctagtatcccaagctgtttaaattcaaaatcttact 390

                                                                       
Query: 181 tccaaaagctcagaccatagtcactacaacctggacaactgaaacatttatagtcagcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tccaaaagctcagaccatagtcactacaacctggacaactgaaacatttatagtcagcac 330

                                                                       
Query: 241 aacttgacaagctatatttctctaaagaagaaaattaatctaagatgggatatgacaaat 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aacttgacaagctaaatttctctaaagaagaaaattaatctaagatgggatatgacaaat 270

                                                                       
Query: 301 ttgagtaggctaacatgcaaaaacatgggtggaggcggacatggcggcctcgagcctgcc 360
           ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 269 ttgagtaggctaacatgcaaaaacatgggtggaggtggacatggtggcctcgagcctgcc 210

                    
Query: 361 atcctagta 369
           |||||||||
Sbjct: 209 atcctagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)