Query= MSMg01no155_p10.b1 MSMg01no155_p10.b1 CHROMAT_FILE:
MSMg01no155_p10.b1 PHD_FILE: MSMg01no155_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:58 2005
(512 letters)
>mm_chr9_17306442_17307352
Length = 911
Score = 493 bits (255), Expect = e-143
Identities = 395/477 (82%), Gaps = 61/477 (12%)
Strand = Plus / Minus
Query: 5 gaggactgggctcagtggggaaagaaggatcttgctgcacaagaatgagaaccaggcaga 64
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 797 gaggactgggctcagtggggcaagaaggatcttgctgcacaagagtgagaaccaggcaga 738
Query: 65 ggtcaatgtagcacaagccagcaagatggtgtcggctggaccgggtcatctaa----ggc 120
|||||| | ||||||||||| |||||||||||||||||||||||| | ||||| |||
Sbjct: 737 ggtcaacgcagcacaagccaacaagatggtgtcggctggaccgggccgtctaaggcgggc 678
Query: 121 ag----------------------------------------------gc----agctcc 130
|| || ||||||
Sbjct: 677 agcgtccgccacgctgctgctctggagcccatgcctgcctgctcgggagctgtaagctcc 618
Query: 131 agccaggctctaccacaaggaggttgtggatcgttatgaaaaccctgggaacgtggggtc 190
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 617 agccaggctctaccacaaggaagttgtggatcattatgaaaaccctgggaacgtggggtc 558
Query: 191 ccttgacaagacatgtaaaaatgttagaaccggattggtgggggttccagcatatggtga 250
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 557 ccttgacaagacatgtaaaaatgttggaaccggattggtgggggttccagcatatggtga 498
Query: 251 cattatgaaattgcagctctaggtggatgaaaaggggaagattgtggccgtcagattcaa 310
||| |||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 497 catcatgaaattgctgctctaggtggatgaaaaggggaagattgtggacgccagattcaa 438
Query: 311 aacatttggctgcagctctgccatggcctatagctccttagccacggagtgggtaaacag 370
||| |||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |
Sbjct: 437 aacgtttggctgcagctctgccatggcctacagctcctcagccatggagtgggtaaa--g 380
Query: 371 g--aaaacggt-gaaggaagccggacatcaaaaacaccgacattgccaaggagctct 424
| |||||||| || ||||||| ||||||||||||||||||||| || || ||||||
Sbjct: 379 ggtaaaacggtaga-ggaagcccgacatcaaaaacaccgacattccccag-agctct 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space: 452302
Effective search space used: 452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_p10.g1 MSMg01no155_p10.g1 CHROMAT_FILE:
MSMg01no155_p10.g1 PHD_FILE: MSMg01no155_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:59 2005
(462 letters)
>mm_chr9_17148943_17149798
Length = 856
Score = 816 bits (422), Expect = 0.0
Identities = 450/462 (97%), Gaps = 6/462 (1%)
Strand = Plus / Plus
Query: 1 atttgatattacagatagcagacacgatgaagtaaaccaaggtggctgatatctgtttca 60
||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 atttgatataa-agatagcagacacgatgaagtaaaccaagttggctgatatctgtttca 259
Query: 61 aaattaaaaacataaaattgttagaaagctaagatgtaataaggtggtattaccttattt 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaattaataacataaaattgttagaaagctaagatgtaataaggtggtattaccttattt 319
Query: 121 tctcccaactggttttgttgtgctgttgggagaagaggttagtggatcttcaaagcttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctcccaactggttttgttgtgctgttgggagaagaggttagtggatcttcaaagcttga 379
Query: 181 cttgaggttctgaaaccactgaccaagacatagaaggtttaacaacagaaatacagagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttgaggttctgaaaccactgaccaagacatagaaggtttaacaacagaaatacagagat 439
Query: 241 ataagaaactcatttcagaatcaggaacaggagacattagagaggagagaacgccttgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ataagaaactcatttcagaatcaggaacaggagacattagagaggagagaacgccttgga 499
Query: 301 accacacagagttcttgtgtattgtgagacactggtgagctggaagaagaccaaagtgaa 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 accacacagagttcttgtgtattgtgagacactggtaagctggaagaagaccaac----- 554
Query: 361 tctcatggtgccaaagggagaccatagtatctagggagcatctggtaacttactcagtaa 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 555 tctcatggtgccaaagggagaccatagcatctagggagcatctggtaacttactcagtaa 614
Query: 421 gtaatgcttcctaaggcagagcaaatacaatcccattgtcac 462
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gtaatgcttcctaaggcagagcaaatacaatcccattgtcac 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 856
Length adjustment: 10
Effective length of query: 452
Effective length of database: 846
Effective search space: 382392
Effective search space used: 382392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
