BAC Information

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BAC

Clone NameMSMg01-155P20
Chromosome9 (Build37)
Map Location 25,518,749 - 25,519,223
singlet/doubletsinglet
Overlap genenone
Upstream geneTbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155P20.T7 (MSMg01no155_p20.b1)MSMg01-155P20.TJ (MSMg01no155_p20.g1)
ACCAG356845AG356846
length738747
length of high quality
(start - end)
476 (72 - 547)486 (78 - 563)
definitionCHROMAT_FILE: MSMg01no155_p20.b1 PHD_FILE: MSMg01no155_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:00 2005CHROMAT_FILE: MSMg01no155_p20.g1 PHD_FILE: MSMg01no155_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAGACGATCCGCGGA
ATTCTCCAGGTAGAGACTCACTTCTATAGGCAGCCAGGAGAAGGCTATCT
TCCACACTGGATAGAGCTTGAACATTTGGAGATTTCAAAGCATGCCTATG
CAATGATGTATGTCCTCCAACAAGGCCACTTGTATTCCAACAAAGCCATG
CCTCCTCATAGGCATATTGAAGTCACCACAATTCATAATAATAGCAAAAT
TGCAGTTGTTAAATAGCAATGAACATGATTTTATGGTTGGTGTGGTCACC
ACAATTTGAAAAACCATTAAATTGTTGCATCATTAGGAAGGCAGAGAACC
ACGACTCTACACAATAATAGCACATATAGATTACTTCCTATATAACTGCA
GCTTAATATTCATTGGCTAATGTTTTCTCTATGTCATTTCCTCCCACTCT
CACCAGCACATGGTAATCACCATTCTTCCTTCAATTTTTTATGTGATTGC
ATTTTAGTATCTGATATACATATGATTGAGCTCTTGTACCATTTGTCTTC
ATTCACCTAGCTTATATCATATAACATACTCTCCAGTTTTATTCTAGTTA
CCACAAATAGTAGGATCTAATCATTTTGATGACTAAATAATATTCCGTTG
TAAACAGATACCACATTTTCCTTATTTACCAGATGAGCAACACTAATATT
GATTGGATATCTTACCACCACGGACTAGCAGTATAAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGACCCATACCTAAACATAATAA
AAGCAATTTAGTGCAAACCAACAATCAATAACAAATTAAATGAATCCATA
CCTGAAGCAATTCCACTGAAATTGGGACAAGACAAGGATGTCCACTCTAC
TCATATCTATTCAACATAGTACTCGAAGTGTTAACTTGAACAATAAGACA
AGAAAAAAAGATTGGGGGATACAAATTGGAAAAGAAGAAATAAAGGTATC
AATCACTATTGGCAAATGATATGATAGTATACATAAGTGACCTCAAAAAT
TCTACCAGAGAACTTCTATAGCTGATAAACAACTTCAGCAAAGTGGCCTG
ATATAAAATTAACTCAAATAAATCAGTAGTCTTCCTTTATACAAAGCATA
AACAGGCTGAGAAATAAATTAGGGAAACAACTCCCTTCACAATAACCACA
AATAATCAAAAATACCATTGTGTGACTCTAACTAAGCAAGTGAAAGATCT
GTATGACAATAACTTCAAATTTCTCAAGAAAGAAATCAAATATCTCCCAT
GCTGATGGATTGGGAGAATTAACATAGTAAAAATACCCATCCTACCAAAG
GCCATTTATAGATTCAATGTAATCCCCATCAAAATCCCAACACAATTCTT
CAAAGATATGGAAAAAGCAATTCTCAAATTCATCCGGAAAGGGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_p20.b1 MSMg01no155_p20.b1 CHROMAT_FILE:
MSMg01no155_p20.b1 PHD_FILE: MSMg01no155_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:00 2005
         (476 letters)



>mm_chr9_25518549_25519423
          Length = 875

 Score =  812 bits (420), Expect = 0.0
 Identities = 462/476 (97%), Gaps = 1/476 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctataggcagccaggagaaggctatcttccacactggatagagcttgaacatttggag 60
           |||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct: 201 ttctataggcagccaggagaagactctcttccacaatggatagagcttgaacatttggag 260

                                                                       
Query: 61  atttcaaagcatgcctatgcaatgatgtatgtcctccaacaaggccacttgtattccaac 120
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 261 atttcaaagcatgcctatgcaatgacatatgtcctccaacaaggccacttgtattccaac 320

                                                                       
Query: 121 aaagccatgcctcctcataggcatattgaagtcaccacaattcataataatagcaaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagccatgcctcctcataggcatattgaagtcaccacaattcataataatagcaaaatt 380

                                                                       
Query: 181 gcagttgttaaatagcaatgaacatgattttatggttggtgtggtcaccacaatttgaaa 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagttgtgaaatagcaatgaacatgattttatggttggtgtggtcaccacaatttgaaa 440

                                                                       
Query: 241 aaccattaaattgttgcatcattaggaaggcagagaaccacgactctacacaataatagc 300
           |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 441 aaccattaaattgttgcagcattaggaaggtagagaaccatgactctacacaataatagc 500

                                                                       
Query: 301 acatatagattacttcctatataactgcagcttaatattcattggctaatgttttctcta 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 501 acatatagattacttcctatataactgcagcttaatattcattggttaatgttttcttta 560

                                                                       
Query: 361 tgtcatttcctcccactctcaccagcacatggtaatcaccattcttccttcaatttttta 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 tgtcatttcctcccactctcaccagcacatggtaatcaccattcttccttcaattttt-a 619

                                                                   
Query: 421 tgtgattgcattttagtatctgatatacatatgattgagctcttgtaccatttgtc 476
           ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 620 tgtgattgccttttagtatctgatatacatatgattgagctcttgtatcatttgtc 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 875
Length adjustment: 10
Effective length of query: 466
Effective length of database: 865
Effective search space:   403090
Effective search space used:   403090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)