BAC Information

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BAC

Clone NameMSMg01-156F03
Chromosome9 (Build37)
Map Location 72,626,696 - 72,626,995
singlet/doubletsinglet
Overlap genenone
Upstream geneTcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396
Downstream genePrtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156F03.T7 (MSMg01no156_f03.b1)MSMg01-156F03.TJ (MSMg01no156_f03.g1)
ACCAG357091AG357092
length707852
length of high quality
(start - end)
318 (45 - 362)147 (76 - 222)
definitionCHROMAT_FILE: MSMg01no156_f03.b1 PHD_FILE: MSMg01no156_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:25 2005CHROMAT_FILE: MSMg01no156_f03.g1 PHD_FILE: MSMg01no156_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAAGGCAATTACGTAGAGCCCCTCCCTGCCCTCCTGTTTTCTCCG
TGGATTCCTGACTCGCTCAGCTCAGTCAGAGTGCTCCGGTCTGTGTCCTT
AGGGCTCCGGAGGTGCAGGTGATGGGATAAACTGATTGGTACACAGCAGG
GATACTGTGGCTGCTGAATGGACTATTATGATAAGTAAGTATTGCAAGGA
ATAGATGGCTCTCTCCAGAGCATTCTGCAATATTCTAGAATGCCTTCAGC
CTCTTCAGTAAACATTATGGGAGATACTAAGAGGTCTTTTTTGACAGGGT
TTCTCTGTATAGTCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTG
GCCTCGAACTCAGAAACCCGCCTGCCTCTGCCTCCCGAGTGCTGGGACTA
AAGGCGTGCGTCACCACGCCCGGCCTAAGAGGTCTTTTTAAAAAGACCCG
TTTGCTGGGCAGTGGATTCTCCTGTCTCTGCCTCTATACTGGGCTTATAG
CTCCTTTCTGCTGGATTTGGCTTTATTCGGTTTCTGGCGATTTGAACTCA
GGTCCTCACACTTGCATTGGCAAGTACTTTACCCACTGATCCTCCTCACT
ATGATTTCTTACGGTACCTTGCCCTAGTACAGGACTGCAGAATGAAAGCC
ATGTTCG
AGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAGA
AACTCTGTCTCGAAAAACCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGCTCTTTTTTTTCCCTTTTTCCCTTCCCTCCC
CCGTTTTTCCCCGCTCCTTTCCCCCCTCTTGTTCTCTCTGGGCGTTTTTT
TGTCCCGCGGGCGCTCTGCCCCCCGCTTTTTTTTTTTTTGTCCGCCCCGC
TGGCGGGTCGCGCGCCCCCNCCCTTTTGGTGNGGTTCCGNGGGGCGGGGG
CCCCCNNNTGGGGTGGTTTTGGGTGNTCGGNGGGGTTTGGGCGGGGCCCC
CCAAACAAAAAAAAAAAAAAAACCGCGGGGTGGGGGGTGGGCGGGCTCCC
TTNCCCTTACCTCCCCTTCTGCTGGGGGTTTGTTTTCCCCCCTTTCCCCC
CACTTCCAGCGCGCGTTCCGGGGCGCGGGGTACGTACCGTATGTTTGTTT
TGTTCGCTTCGCCGGTTGGTTATCCGTTTGGGCTGGGCCGTTGTTTGTAT
TGTTAGGGGGCTCGCGCGATCTCGGGTCTCATGCTCACCTGCGGTCGTGT
TGTTCTTCTCGGTTCCTCTCTCTTTTTCCCTGGCACCGTTTGTCGGGCGC
CGCCCCCCTCTTATCTCCCGCTCTTTGCGTCGTTTGCGCTTGATTGCGCG
CGCTTGCTGGTTTCCTATTCCCCTTCTTTTGTGTTTCCGTTGTTCGCCCC
GT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_f03.b1 MSMg01no156_f03.b1 CHROMAT_FILE:
MSMg01no156_f03.b1 PHD_FILE: MSMg01no156_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:25 2005
         (318 letters)



>mm_chr9_72626278_72626995
          Length = 718

 Score =  516 bits (267), Expect = e-151
 Identities = 296/315 (93%), Gaps = 15/315 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctaaggcaattacgtagagcccctccctgccctcctgttttctccgtggattc 63
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ggaattcctaaagcaattccgtagagcccctccctgccctcctgttttctccgtggattc 659

                                                                       
Query: 64  ctgactcgctcagctcagtcagagtgctccggtctgtgtccttagggctccggaggtgca 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ctgactcgctcagctcagccagagtgctccggtctgtgtccttagggctccggaggtgca 599

                                                                       
Query: 124 ggtgatgggataaactgattggtacacagcagggatactgtggctgctgaatggactatt 183
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 598 ggtgatgggataaactgattggcacacagcagggatactgtggctgctgaatggactatt 539

                                                                       
Query: 184 atgataagtaagtattgcaaggaatagatggctctctccagagcattctgcaatattcta 243
           ||||||||||||||||||||               |||||||||||||||||||||||||
Sbjct: 538 atgataagtaagtattgcaa---------------ctccagagcattctgcaatattcta 494

                                                                       
Query: 244 gaatgccttcagcctcttcagtaaacattatgggagatactaagaggtcttttttgacag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gaatgccttcagcctcttcagtaaacattatgggagatactaagaggtcttttttgacag 434

                          
Query: 304 ggtttctctgtatag 318
           |||||||||||||||
Sbjct: 433 ggtttctctgtatag 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)