BAC Information

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BAC

Clone NameMSMg01-158D17
Chromosome9 (Build37)
Map Location 72,189,812 - 72,306,445
singlet/doubletdoublet
Overlap geneSuhw4, LOC100041760, Mns1, LOC666007
Upstream geneGrinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970
Downstream geneTex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158D17.T7 (MSMg01no158_d17.b1)MSMg01-158D17.TJ (MSMg01no158_d17.g1)
ACCAG358503AG358504
length741748
length of high quality
(start - end)
323 (45 - 367)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no158_d17.b1 PHD_FILE: MSMg01no158_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:44 2005CHROMAT_FILE: MSMg01no158_d17.g1 PHD_FILE: MSMg01no158_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,306,129 - 72,306,445)(72,189,812 - 72,190,097)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTGATATGATGGCATCATAGAATGCATAGTAAATAAAAATGACTA
ATTCTGCAGTTAAAGTACTAATGTGTTTAATTTTTGTCAAACTGTATACA
TGATGAAATAGGAGGATGTTTTAGAACATGCAGATAGACCAGGGCCTACT
GTCACCAACTGTAAAACAGCAGTTACGCTGACATCTAGTGGCAGCATCTG
AGCACTCCAGGTCTCGCCCGGCCTTGCTATGAAGACTCGGCTTCAGACTC
CATCCCTTTTCTGATAGGCCTTCCTGAACTCTTCACCAAGCATGTCAACA
TCGTCTTCTCTTTTTTTTTTCCCTACACACAAGCATTTTGTTGGTTACTT
TGAACATTAGAGTATTCCACTGAATTTTCTTAAGACTAACACACACAGAC
ATGAAGCTAATGAAGAAATGCAGATAATGAGATCGATTATTGAAACTTAA
TTTTAAAATATCAGAAAGACTATGGCTTCAAGTATATCTGAATATCACTG
AGCTGCTCCCAGTTCCTGATTACTCCACCTCAGAGTATTAAGCTGTGCTA
GGGGCTGCTGTGCCTTATGCTCTAACTCCGGCCGTGACTGCCTACATTAC
AGGCTACTGTCCGGACGCACTCTTTCTGCCTCAGTCTATCAGCGGCTCAT
TCTGACACACTGAATTTTACTCCTAACGGGTCCCGGCTGCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAATCTGGCATATCACTCTTCCCAAAAA
TACCAACAGAAATTCTTGATGAACACTGAGAAACTAAATGCCCATTTTAC
TTGGACCAGTTTAATACTATATGTATTCTTATAAAGGGTATCCTTTTGTA
TACAAATAAACGCTGACTGGCTCCATATCTGTGCTGTTTAGTTCATTTCC
AAAATTTATATATGGTCTGGAGGAAAATTTTTCAAATCAAGGAAATATAA
GTTAAATGTAGTTTTAGTCCTAGCACTTAGGTAAAAAAGGCAAGTAGATC
TCCCTGATTCCAGGCCAACTATGTCAATGATTTCAAGGCCATCTAGGGCT
ACATAGTGAAACCTTGTCTATGAAAGAAAAAGATAGGGGGGAGATTCATT
CATGTGATTTTCTTTTTTTTAAATTCTGTATGTGAATATCTTAGAGAATT
TTGACCTATCTTTCAATATTTATTTGGCATTAATCTCTAATTGTTTATTA
TTTATTTATTATTAAAATCTAATAAATCATGTAATCTCCTAATACATAAA
TTTATCATTTTTCTTCATTGGATATTAAAAAATAAATCATATTAGTACTT
GGTTTAAGATTCCTAGAAAATGCTGAATTGCATATAAGGTGTAGTATATA
ATTACATGCTAGCAAGTGAATATATGTTGTCCCACTTATTAGAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_d17.b1 MSMg01no158_d17.b1 CHROMAT_FILE:
MSMg01no158_d17.b1 PHD_FILE: MSMg01no158_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:44 2005
         (323 letters)



>mm_chr9_72305926_72306648
          Length = 723

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtgatatgatggcatcatagaatgcatagtaaataaaaatgactaattctgc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggaattctgtgatatgatggcatcatagaatgcatagtaaataaaaatgactaattctgc 461

                                                                       
Query: 64  agttaaagtactaatgtgtttaatttttgtcaaactgtatacatgatgaaataggaggat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agttaaagtactaatgtgtttaatttttgtcaaactgtatacatgatgaaataggaggat 401

                                                                       
Query: 124 gttttagaacatgcagatagaccagggcctactgtcaccaactgtaaaacagcagttacg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gttttagaacatgcagatagaccagggcctactgtcaccaactgtaaaacagcagttacg 341

                                                                       
Query: 184 ctgacatctagtggcagcatctgagcactccaggtctcgcccggccttgctatgaagact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctgacatctagtggcagcatctgagcactccaggtctcgcccggccttgctatgaagact 281

                                                                       
Query: 244 cggcttcagactccatcccttttctgataggccttcctgaactcttcaccaagcatgtca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cggcttcagactccatcccttttctgataggccttcctgaactcttcaccaagcatgtca 221

                            
Query: 304 acatcgtcttctctttt 320
           |||||||||||||||||
Sbjct: 220 acatcgtcttctctttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no158_d17.g1 MSMg01no158_d17.g1 CHROMAT_FILE:
MSMg01no158_d17.g1 PHD_FILE: MSMg01no158_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:44 2005
         (286 letters)



>mm_chr9_72189612_72190297
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatctggcatatcactcttcccaaaaataccaacagaaattcttgatgaacactgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatctggcatatcactcttcccaaaaataccaacagaaattcttgatgaacactgaga 260

                                                                       
Query: 61  aactaaatgcccattttacttggaccagtttaatactatatgtattcttataaagggtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactaaatgcccattttacttggaccagtttaatactatatgtattcttataaagggtat 320

                                                                       
Query: 121 ccttttgtatacaaataaacgctgactggctccatatctgtgctgtttagttcatttcca 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcttgtatacaaataaacgctgactggctccatatctgtgctgtttagttcatttcca 380

                                                                       
Query: 181 aaatttatatatggtctggaggaaaatttttcaaatcaaggaaatataagttaaatgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatttatatatggtctggaggaaaatttttcaaatcaaggaaatataagttaaatgtag 440

                                                         
Query: 241 ttttagtcctagcacttaggtaaaaaaggcaagtagatctccctga 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttagtcctagcacttaggtaaaaaaggcaagtagatctccctga 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)