BAC Information

Click to search

BAC

Clone NameMSMg01-159C04
Chromosome9 (Build37)
Map Location 70,261,322 - 70,410,500
singlet/doubletdoublet
Overlap geneCcnb2, Rnf111, Sltm
Upstream geneNarg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e
Downstream geneB230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159C04.T7 (MSMg01no159_c04.b1)MSMg01-159C04.TJ (MSMg01no159_c04.g1)
ACCAG359159AG359160
length730727
length of high quality
(start - end)
318 (46 - 363)293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no159_c04.b1 PHD_FILE: MSMg01no159_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:48 2005CHROMAT_FILE: MSMg01no159_c04.g1 PHD_FILE: MSMg01no159_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,410,189 - 70,410,500)(70,261,322 - 70,261,613)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGACTACGCTCTCTATGACAAAATTAAAAAAAAAAAAATCACTCA
TGCCTCTTGACAATTAGAAAATTCTTGACCCTCATTTGCCAGGGTAGGCA
GGAGGCGCGTGCTTTATGAATAGCGACAATCCTCATTCCCTATTATCATC
CAAAGGCTTTCCTACGAGCTATCAGACTTCAAAGCACGACAATGGGTCTG
TTTTAAAGGAAATACCTGGAAATTGCTTTATAATTCAACTTTAATTTTCT
TACCCTTGATAATAAATAAATAAAGATAATTTTTTGTCTTACTAAAGCAG
CAAAAGGGGGGGGAGTTCACCTACCTTTGGTCGNGNACAGNGAAATTGGC
ACACTCATCTCTAGCGCCNTGCCCAAAAAAACAAAAAAACAAAAACCCAA
ACCTTAAATATCCAAGGTTGTAAAGAGGCTATTAGACACACAGAAAGTAG
CCTGATTATGAAGTCATTATGGCATGTTATATAAAAGCAAAATAGAGAAT
CAACAGCAATTTATGACATGGCAAAAACTATGTAAATATACATGTAAAAT
AAGCAAAAAATGTAAAAGGCGTAGGTGATAGGATTCGAAGTAATTTATAA
ATAAATTTTCTAAGTTCTGAGACCTCCATATCAAACTAGAAAAAAAATAT
TTTCTATTAGTAAATCATAATTTATCTGTG
TCGATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACTACTTCCTTCTGAATTAAGGCC
CTGGCAAGCAGGAAGCACAAGAGCACAGTCCAGTCTGAGAACAAAGCAGG
AGGATGCAAAGACTTAGCTGACAGGGTGGTTATTTATAAAACTCGAACAA
ATCAAAAAGTTGTACAGCTCAAATAAATATTTCGTAGTGAAGTATAAATA
AACCATTATTTGAAAAGAATTTCAAAATCCTAACAGGATTTCTAGATCAT
ACAGAGTACATATTAAGGGAATAAAACACAAACCTGGCTCACAGCTAATG
CCATCCATAGCTTTAAATGTTGTTTTGTCCCACTCCCCGCCTGCAGTAGC
AGCACGGAGGAGGCTGAGGTGCAAGGAGAGCTAGAAGATGAAGTCCAGCC
TAAGGTGGAGAGTCCTAGGTTAACCTGGGCTAGAGTGAGAACATGACTCA
GAGATAACAAAAAAGTAAAACAAAACCACAACTTAAGTGAATTCTGTTAC
TGTTTGCACATTGCCCTAAGTACCGTGGGCCCACTGTGCGCTCTCTCTGC
GCAGTGTCTACTGCAGAGGTTAACTAAGTGAACCTGGGTGAGGTGCCATG
AGGAGCATTGCTTATTTAGGTCAGCCTGGGCACACAGTAAGTTCCAGGCC
AGCTTATGCTACACAGTGGGAGCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_c04.b1 MSMg01no159_c04.b1 CHROMAT_FILE:
MSMg01no159_c04.b1 PHD_FILE: MSMg01no159_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:48 2005
         (318 letters)



>mm_chr9_70409986_70410703
          Length = 718

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagactacgctctctatgacaaaattaaaaaaaaaaaaatcactcatgcctctt 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattcagactacactctctatgacaaaattaaaaaaaaaaaaatcactcatgcctctt 456

                                                                       
Query: 64  gacaattagaaaattcttgaccctcatttgccagggtaggcaggaggcgcgtgctttatg 123
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cacaattagaaaattcttgaccctcatttgccagggtaggcaggaggcgcgtgctttatg 396

                                                                       
Query: 124 aatagcgacaatcctcattccctattatcatccaaaggctttcctacgagctatcagact 183
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 395 aatagcgacaatcctcattccctactatcatccaaaggctttcctacgagctatcaaact 336

                                                                       
Query: 184 tcaaagcacgacaatgggtctgttttaaaggaaatacctggaaattgctttataattcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tcaaagcacgacaatgggtctgttttaaaggaaatacctggaaattgctttataattcaa 276

                                                                       
Query: 244 ctttaattttcttacccttgataataaataaataaagataattttttgtcttactaaagc 303
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 275 ctttaattttcttacccttgataataaataaataaagataactttttgtcttactaaagc 216

                       
Query: 304 agcaaaaggggg 315
           ||||||||||||
Sbjct: 215 agcaaaaggggg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no159_c04.g1 MSMg01no159_c04.g1 CHROMAT_FILE:
MSMg01no159_c04.g1 PHD_FILE: MSMg01no159_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:48 2005
         (293 letters)



>mm_chr9_70261122_70261814
          Length = 693

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactacttccttctgaattaaggccctggcaagcaggaagcacaagagcacagtccagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactacttccttctgaattaaggccctggcaagcaggaagcacaagagcacagtccagtc 260

                                                                       
Query: 61  tgagaacaaagcaggaggatgcaaagacttagctgacagggtggttatttataaaactcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagaacaaagcaggaggatgcaaagacttagctgacagggtggttatttataaaactcg 320

                                                                       
Query: 121 aacaaatcaaaaagttgtacagctcaaataaatatttcgtagtgaagtataaataaacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaaatcaaaaagttgtacagctcaaataaatatttcgtagtgaagtataaataaacca 380

                                                                       
Query: 181 ttatttgaaaagaatttcaaaatcctaacaggatttctagatcatacagagtacatatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatttgaaaagaatttcaaaatcctaacaggatttctagatcatacagagtacatatta 440

                                                               
Query: 241 agggaataaaacacaaacctggctcacagctaatgccatccatagctttaaa 292
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 agggaataaaacacaaacctggctcacagctaatgccatccataggtttaaa 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)