BAC Information

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BAC

Clone NameMSMg01-159C05
Chromosome9 (Build37)
Map Location 90,415,949 - 90,539,964
singlet/doubletdoublet
Overlap genenone
Upstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
Downstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159C05.T7 (MSMg01no159_c05.b1)MSMg01-159C05.TJ (MSMg01no159_c05.g1)
ACCAG359161AG359162
length736736
length of high quality
(start - end)
322 (45 - 366)239 (130 - 368)
definitionCHROMAT_FILE: MSMg01no159_c05.b1 PHD_FILE: MSMg01no159_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:48 2005CHROMAT_FILE: MSMg01no159_c05.g1 PHD_FILE: MSMg01no159_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,539,647 - 90,539,964)(90,415,949 - 90,416,185)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGACAGAATTACATATACTATCCTATCATTTGCGACTAGTTATA
CTTTGTCTTCTTCCTCTCCAACCTAACTTGTTTTTATGCTTCGCCAAATG
GAGATTGAAAACATCTAATGCCATCTGAAGTAGAAAAATAGGAAGATGTT
CTGAAGAAAAATGAGTCCAACATCTATTGAGAATTTCTACCTTCCCTCTC
TACCTGCAGTCAGGTCACTGTCAGTGATAAACACCCCCTTCAAATAGTCT
TCATTGTTGTCATCTTGTTACTGAACTTGAAAGTCACAGCCTGTGCCCCA
AGTCAGTTCCAGTGATTTTATCCTCACCACCTCCATTAAAAAAGCCAAAC
TAAAAATGAAAAGCAGAACACGAACATGTGTTCAATATAGTCATACTGGG
AAGTGAAAAAGATCAGTGCACCCCTCAATTCGATCTTTGAGGTCATGGAA
TGATATTAAAATTTAAGCAGAGGGCCAAGGTTATGCACATCTAACCAGTC
TCTATCAAAGTATGGTCCTGTCCAGCATCAGTCCATCATTGTCTGAGATT
CAATCTCATACTATAAGTTATTGGGACAGTGTGAAAACTCTGTCAGGAAG
ATAAGTTTCCATCTGGCTGTAGCATTTTCCTTTCAGCAACATGACATTTT
CTGGAGATATGCTCATTTCTTTGGGGCACATCGCAG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTCATAGTATGCTCATGTTCCTCC
TTAGGGATAAGCCTCATTTGTATGTATCAGGTAGTTCTTATATACACGTC
TACATATCCATATCATCGTGATGTGTCACAAAACAATTTCAATTAAATTA
TTGAGAGTATGTGACTGTTGTTGTTTTTAAAATTATCTTCCTCTGAGCAT
GATAAAAAAATATTCATGCACGTATTCTATTGGGAGGCCCAGTAAGTGTT
AGCTTTCAGTCATTTTTCTGAGACCATGTAAGAGTTTACCGCCAGTGCCT
AGCTGGGCTCTTGTGGTTATAGAAATACCATGCTCTTGGCTTGACATTAG
TGCTATTTCCAAATGTTACCACGGTGATCACCTATGTAGCATCATTAACC
CTTCTCACAACAGCTCAATCTGAGATTCAAGTTTCACATTTCCATTATTA
TGGGAGGGTAATTATTTCATTACTCCAGGGAAGAAGATTTAGGAGGTAAA
TAGCTCTTCATTAAATCTTAAACGATCCTACTCTTTTTAGGCTACAGAAG
TGCCAAATTATTAAAGTGATGAAATTTAAAAGAGTAAAACATGACTGGAA
GTTGAAAAATAAAATAAAATCAATTTTTGTGCAGTGTAACTATAAATATT
TCTCTCTAGGACAAATATCCGACATAAAATGTAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_c05.b1 MSMg01no159_c05.b1 CHROMAT_FILE:
MSMg01no159_c05.b1 PHD_FILE: MSMg01no159_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:48 2005
         (322 letters)



>mm_chr9_90539370_90540091
          Length = 722

 Score =  569 bits (294), Expect = e-166
 Identities = 312/318 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgacagaattacatatactatcctatcatttgcgactagttatactttgtc 63
           ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| 
Sbjct: 595 ggaattcactgacagaattacatatgctatcctatcatttgcaactagttatactttgta 536

                                                                       
Query: 64  ttcttcctctccaacctaacttgtttttatgcttcgccaaatggagattgaaaacatcta 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 535 ttcttcctctccaacctaacttgtttttatgcttcgccaaatggagattgaaaacagctg 476

                                                                       
Query: 124 atgccatctgaagtagaaaaataggaagatgttctgaagaaaaatgagtccaacatctat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 atgccatctgaagtagaaaaataggaagatgttctgaagaaaaatgagtccaacatctat 416

                                                                       
Query: 184 tgagaatttctaccttccctctctacctgcagtcaggtcactgtcagtgataaacacccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgagaatttctaccttccctctctacctgcagtcaggtcactgtcagtgataaacacccc 356

                                                                       
Query: 244 cttcaaatagtcttcattgttgtcatcttgttactgaacttgaaagtcacagcctgtgcc 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctccaaatagtcttcattgttgtcatcttgttactgaacttgaaagtcacagcctgtgcc 296

                             
Query: 304 ccaagtcagttccagtga 321
           ||||||||||||||||||
Sbjct: 295 ccaagtcagttccagtga 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no159_c05.g1 MSMg01no159_c05.g1 CHROMAT_FILE:
MSMg01no159_c05.g1 PHD_FILE: MSMg01no159_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:48 2005
         (239 letters)



>mm_chr9_90415749_90416387
          Length = 639

 Score =  443 bits (229), Expect = e-129
 Identities = 235/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtagttcttatatacacgtctacatatccatatcatcgtgatgtgtcacaaaacaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtagttcttatatacacgtctacatatccatatcatcgtgatgtgtcacaaaacaattt 260

                                                                       
Query: 61  caattaaattattgagagtatgtgactgttgttgtttttaaaattatcttcctctgagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caattaaattattgagagtatgtgactgttgttgtttttaaaattatcttcctctgagca 320

                                                                       
Query: 121 tgataaaaaaatattcatgcacgtattctattgggaggcccagtaagtgttagctttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgataaaaaaatattcatgcacgtattctattgggaggcccagtaagtgttagctttcag 380

                                                                    
Query: 181 tcatttttctgagaccatgtaagagtttaccgccagtgcctagctgggctcttgtgg 237
           ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tcatttttctgagaccatgcaagaatttaccgccagtgcctagctgggctcttgtgg 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)