BAC Information

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BAC

Clone NameMSMg01-159E23
Chromosome9 (Build37)
Map Location 103,100,972 - 103,101,288
singlet/doubletsinglet
Overlap geneSrprb
Upstream geneEphb1, Ky, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk, Slco2a1, Rab6b
Downstream geneTrf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik, EG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159E23.T7 (MSMg01no159_e23.b1)MSMg01-159E23.TJ (MSMg01no159_e23.g1)
ACCAG359283AG359284
length736736
length of high quality
(start - end)
321 (49 - 369)291 (78 - 368)
definitionCHROMAT_FILE: MSMg01no159_e23.b1 PHD_FILE: MSMg01no159_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:01 2005CHROMAT_FILE: MSMg01no159_e23.g1 PHD_FILE: MSMg01no159_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCTTAACAATGCACTACGTCCCGGGAGTGTAAACAGATTAAA
TCCTTTCCTCCCCAAGTTGCTTTGGGCCCGCACCACACATGACAGTAGAA
CTCAGTAAAGAAGAGTGTCAGATTCTAGAACATTCCAGATACCTCTTACC
CTGTTATTGTTGACTTTGTATATGGCAGAACTATCGGTAATAGAAGTCTG
TGTGTCTCTGTACTGGCCAGTTAGCAACTGTAAACAAAACAAAACCAAGA
CAGACAAATCAGGGTAAGCGCGTTACAATAACACTGAATGCAATGTAAAA
AATGACATTTTCATTCTGTGTTGAGTAAGGCCAAATGAACGAATGCTACT
TGAAACAGCTGAAAACGATCACACCGCTTTATTTTTAACTTGTAGAATAG
TGATTAATTACAGCCGGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACT
TGAGAGGCAGAGGCAGGCGGATTTTTGAGTTCGAGGCCAGCCTGGTCTAC
AGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAA
AAACCAAATAATAATAATAATTAATTACAAGCTTTATTCCTCCTTTTTGC
AGTGCCATCAGAAAGTGGCACCCTGGGCCCAACATTATTAGTATTATTTT
TAAACAACAGCAAGGGGCCAAATTACTGACCTGTAN
ATCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACATTGAAGACCAGGTTGGTCTT
GAACTCACAGATCCATTGCTTCTGCCTCTGGGTGCCACTATACCCAGCTT
TAAAGTGTATTTTTAACATGACATTGCTGAAGATATAACTAATGGGTCTT
TCAACCCTTGGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATG
ACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCAC
ACTGCTGTTCATCACCAAAGAAAGTCAAGACTGGAACTCAAGCAGGTCAG
GAAGCAGGAGCTGATGCTGTTTCACCCCCCCCCCCCCCTTTACTGGCTTG
CTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATAAAACCAAGACTACCAGC
CCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTG
AGAAAATGCCTTACAGTTGGATTTCATGGAGGCATTTCCTCAACTGAAGT
TCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCC
AGTACACTTGGTGACCAAAATTTCCAGTCTATGGTAGACATTTACTGAAT
TACAGAATTATGAATTCATTAAAATATTTTCAAGNATTTTGTTTATATGT
ACAGATGTGGGTGCCCAGGGAGGCCAAAAAAAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_e23.b1 MSMg01no159_e23.b1 CHROMAT_FILE:
MSMg01no159_e23.b1 PHD_FILE: MSMg01no159_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:01 2005
         (321 letters)



>mm_chr9_103100768_103101488
          Length = 721

 Score =  551 bits (285), Expect = e-161
 Identities = 309/317 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccttaacaatgcactacgtcccgggagtgtaaacagattaaatcctttcctccc 64
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccttaacaatgaactacatcccgggagtgtaaacagattaaatcctttcctccc 264

                                                                       
Query: 65  caagttgctttgggcccgcaccacacatgacagtagaactcagtaaagaagagtgtcaga 124
           |||||||||||||| | ||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 caagttgctttgggtcagcaacacacatgacagtagaacttagtaaagaagagtgtcaga 324

                                                                       
Query: 125 ttctagaacattccagatacctcttaccctgttattgttgactttgtatatggcagaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctagaacattccagatacctcttaccctgttattgttgactttgtatatggcagaact 384

                                                                       
Query: 185 atcggtaatagaagtctgtgtgtctctgtactggccagttagcaactgtaaacaaaacaa 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcggtaatggaagtctgtgtgtctctgtactggccagttagcaactgtaaacaaaacaa 444

                                                                       
Query: 245 aaccaagacagacaaatcagggtaagcgcgttacaataacactgaatgcaatgtaaaaaa 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 aaccaagacagacaaatcagggtaagcgagttacaataacactgaatgcaatgtaaaaaa 504

                            
Query: 305 tgacattttcattctgt 321
           |||||||||||||||||
Sbjct: 505 tgacattttcattctgt 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)