BAC Information

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BAC

Clone NameMSMg01-159H04
Chromosome9 (Build37)
Map Location 25,395,417 - 25,395,725
singlet/doubletsinglet
Overlap gene2310005P05Rik
Upstream geneCypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159H04.T7 (MSMg01no159_h04.b1)MSMg01-159H04.TJ (MSMg01no159_h04.g1)
ACCAG359379AG359380
length724732
length of high quality
(start - end)
313 (43 - 355)36 (74 - 109)
definitionCHROMAT_FILE: MSMg01no159_h04.b1 PHD_FILE: MSMg01no159_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:11 2005CHROMAT_FILE: MSMg01no159_h04.g1 PHD_FILE: MSMg01no159_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAAATCAGGCAGCTTGATGGCTTTTGAGAGTCCAGCAAGCTGTTCTCT
ATGAGCATTGAGACCTTTACTTTCTGGGTGCCTCCCCCAGTAACTCTGGG
GCCTTAAATTTACCCCCTAAGCCCAGCATCATTTAACTCCAGCAGGAGGT
GGGGCTTGGGGACAACCTGTGTCTCTATCATGGGATGTATAAGCCTGTGT
CCCATCTCTCGAATTTGTAGTAGTAAAACTTATGAAGTTGGTGTATGCTC
ACATAGATGTGTCTGCTGTGGTACCAAGTAGCTCCTTCAATCCCTCTTCC
TGCCATATGTATGAGCCCCCGCCTTGTATTCCTGGCACCTGTGGTTCTGA
TCCATGACATTACAGAATAGCTACCATGCCTACAACCTTACAAAAACAAC
CTGGTAAACACTGTCTCTAGCTAACAATAAAAGACAAGCTATACTTAATA
GGCTAATAAAGAAAATACTAGCTCTGGCATTGGGAGTGATCTTTTCAAAT
CACGGTAAGCAATCACCCAGCACAGCTCTTGGCTTCTTGTTCTTCAAGTC
ATGTTCAAGGCATGGTCAGTGGTCTAGGACACAGACAGCTTATCCTAACA
GGCAACATGTCCCAGTCCAAACCTCAAGGTGGTTTCTCTGGCTGTGACAG
TGGCATCTATAGAGCTGTCAGTCC
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACACCCCTAAGCCCCTTACTCCTTAA
AAGCCCCTGGCTTTCGATCCTCGGGGCTGACATCCGTTATCTCCTGTGTG
GAATGCATGTCGGTCCGAAGCTCCGAAATTAAACGTCCTCATGTAATTAC
AGCGAGGGGGTCCTCATGTTTCTTTGGAAGCTCTCACACTCCCAAAACTA
AAGTGGGGGTCCCCGAAAGGGGGTCTTACAGCATCTGGGGAATATCATCT
TGAGTGAGGTAACCCATTCACAAAAGAACACAGATTATATGCACTAACTG
ATAAGTGTTTTTTATCCCCCCCCCCCCAAATCCTTCTTAAAAAGGAAAAC
AAAATACCCTTGGAAGGAGTTACAAAAACAAGTTTGGGGCAAAGGCTGAA
GGAAGGACCATTCAAAAAATGCTCCACTTGGGAATCCATCCTATAAACAA
CCACCAAACCCAAACACTATAGCAAATGCCAACAAGAACCTGATGACAGG
AGCCTGATATAGCTGTCTCATGAGGGCCTCTTCCAGTGCCTGGAAAATAC
AAAAGTGGAGGCTCACAATCATCCACTGAACAGAGCACAAGGTCCCCAAT
GAAGCACCTAGAGAAAGTACCCAAGGAGCTGAAGTGGTTTGAAACCCCAT
AGAAGGAACAGCAATGTGAACTAACCTGTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_h04.b1 MSMg01no159_h04.b1 CHROMAT_FILE:
MSMg01no159_h04.b1 PHD_FILE: MSMg01no159_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:11 2005
         (313 letters)



>mm_chr9_25395213_25395925
          Length = 713

 Score =  536 bits (277), Expect = e-157
 Identities = 301/309 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaatcaggcagcttgatggcttttgagagtccagcaagctgttctctatgagc 64
           ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattccaagtcaggcagcttgatggcttttgagagcccagcaagctgttctctatgagc 264

                                                                       
Query: 65  attgagacctttactttctgggtgcctcccccagtaactctggggccttaaatttacccc 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgagaccttttctttctgggtgcctcccccagtaactctggggccttaaatttacccc 324

                                                                       
Query: 125 ctaagcccagcatcatttaactccagcaggaggtggggcttggggacaacctgtgtctct 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 ctaagcccagcatcatttaactccagcaggaggtgggccttggggacaacctgtgtctct 384

                                                                       
Query: 185 atcatgggatgtataagcctgtgtcccatctctcgaatttgtagtagtaaaacttatgaa 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 385 atcatgggatgtataagcctgtgtcccatctctcaaatttgtagtagtaaaacttataaa 444

                                                                       
Query: 245 gttggtgtatgctcacatagatgtgtctgctgtggtaccaagtagctccttcaatccctc 304
           |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 gttggtgtatgctcacattgatgtgtctgctgtggtaccaagtaactccttcaatccctc 504

                    
Query: 305 ttcctgcca 313
           |||||||||
Sbjct: 505 ttcctgcca 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)