Query= MSMg01no159_k22.b1 MSMg01no159_k22.b1 CHROMAT_FILE:
MSMg01no159_k22.b1 PHD_FILE: MSMg01no159_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:27 2005
(328 letters)
>mm_chr9_92880001_92880728
Length = 728
Score = 553 bits (286), Expect = e-162
Identities = 316/328 (96%), Gaps = 4/328 (1%)
Strand = Plus / Minus
Query: 5 gaattctgagcatgcattaactctgttgttgtgctatatgtaaatgtagacacaattgca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaattctgagcatgcattaactctgttgttgtgctatatgtaaatgtagacacaattgca 379
Query: 65 actaaaagcatagtaagccaagaaaacagagaacacaaattatttcttatgaaatccaaa 124
||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 378 actaaaagcatagaaagccaaggaaacagagaacacaaattatttcttatggaatccaaa 319
Query: 125 ttaattaactttggttgactgcagtcatagtgtaagaggtgagttgctaaaacatatgat 184
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 318 ttaattaactttggttgactgcagtcatagtgtgagaggtgagttgctaagacatatgat 259
Query: 185 agaagcctactcagtttacaaggaacaatggaccttaagccatctctcaggccaagtctt 244
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 258 agaagcttactcagtttacaaggaacaatggaccttaagccatctctcaggccatgtctt 199
Query: 245 agacaggtcttgaatgctgtgataaattccgctatcaaaagcaacgtggaaaaaaa---- 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 198 agacaggtcttgaatgctgtgataaattccgctaccaaaagcaacgtggaaaaaaacaaa 139
Query: 301 ttcatttcatcttacaattctgattctg 328
||||||||||||||||||||||||||||
Sbjct: 138 ttcatttcatcttacaattctgattctg 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_k22.g1 MSMg01no159_k22.g1 CHROMAT_FILE:
MSMg01no159_k22.g1 PHD_FILE: MSMg01no159_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:27 2005
(293 letters)
>mm_chr9_92733336_92734032
Length = 697
Score = 543 bits (281), Expect = e-159
Identities = 292/297 (98%), Gaps = 4/297 (1%)
Strand = Plus / Plus
Query: 1 aatgttatgaacatcagataaccttccttttttactgtttatatgcatttaagtggattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgttatgaacatcagataaccttccttttttactgtttatatgcatttaagtggattc 260
Query: 61 tttattgtttaaatattgtatcttagaaattaggtatttttcctgaaacaaattgaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttattgtttaaatattgtatcttagaaattaggtatttttcctgaaacaaattgaataa 320
Query: 121 ataacttaataaacacctttatttgttatggtactagatttgactgagctgagtccccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataacttaataaacacctttatttgttatggtactagatttgactgagctgagtccccat 380
Query: 181 tctggtcttgaaagttaagtaaatgtcccttttatatgatgactaga--ta--tcaataa 236
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 381 tctggtcttgaaagttaagtaaatgtcccttttatatgatgactagagttaaatcaataa 440
Query: 237 tcagcagaagttctcaattagtactcagtgatcagcccagcaccaatcaatggttca 293
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagcaggagttctcaattagtactcagtgatcagcccagcaccaatcaatggttca 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 697
Length adjustment: 9
Effective length of query: 284
Effective length of database: 688
Effective search space: 195392
Effective search space used: 195392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
