BAC Information

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BAC

Clone NameMSMg01-160B21
Chromosome9 (Build37)
Map Location 45,055,993 - 45,056,277
singlet/doubletsinglet
Overlap genenone
Upstream genePdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4
Downstream geneIl10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160B21.T7 (MSMg01no160_b21.b1)MSMg01-160B21.TJ (MSMg01no160_b21.g1)
ACCAG359873AG359874
length756716
length of high quality
(start - end)
44 (147 - 190)285 (69 - 353)
definitionCHROMAT_FILE: MSMg01no160_b21.b1 PHD_FILE: MSMg01no160_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:59 2005CHROMAT_FILE: MSMg01no160_b21.g1 PHD_FILE: MSMg01no160_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGGTAGCCCTCCATCCTTACGAAGGCGGAGCCCTGACTCCCAG
GGGGAGGCGAGAGCGGAGACCCTTGACCTTGGGGGATGCGTCAGGCTGGC
ACCCCCTTCCCACTTCTGCTACCATTCAGTTTTGTCCTCTGGCTCGGATC
CTCTTCCAAGAATAACATGGGCAGGGGTCTACAACCCGGAAAGGGAAAGA
AAGAATGAACAAACAGAACACCTGAGAGGGTCACAGCGTTTGGGGACGCA
GAGACAGCCGGGGCTTTAAATGAGGTTGGAACATCTTTGGGGGTCAAACT
CATGGGAGTAATAGTTTCTCCCCGTCGCCCCCGAATAACTCTCAAGGTCA
CCGAGAATAAGCCGGCCAATGTAAAAAAATAAAACAGGAAAAGGAGGATG
GGATCCAGTAAACTTACCACATTAAACCAAGTCACGGGGACTGGGGATGT
CCGTCATACAGCGAAGAGCTCATACAGGGAGGAACCGAGAACAAGGACCA
CGTAAAAACAGGTGAAAAAAGAACAAAGGGAGAAAAAGGGGGGAAAAATT
GGTGACACGAGGGAAAAAGAAAGAAAGGGGAAAAAAAAGGAGAAACAATT
GAAAAAAAAAAAAAAAAAGGGGAGAAAAAGGGAAAAACAAAAAGAGGAAA
AAGGGGTGGGAAACCCCATCCCACGGATGGTGGGTGGAAAAACAAGGGGG
TTTAGG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACATTTTGGGGACCAGAAGTGAAAATGTTC
TGTCTGCTCAGAGGAACAGCAAACCAACAAAACAATGTGGGAGTGCAGTG
CTGGAGACCAAAGCCTTGGTGGTCCCTGCCCTTCTCACTCACCCATTCAC
CCCATCCACCCTGCTTCTGCGGAACCATGGGCTTGGCTTCCATTCCCTAA
AGCCTTGGATAGGTCTTCCCGTGCATAAGCAGAGGGCTGCTGGGAGAAAG
GTGGGTGGAAATGGAAGAAGTCCCTCCTCTTCTATTTTAAGCCTGACTCT
TCTCTTTATTACCCCGCCCCCACCCTCCCTGGGCCCCAGGGACCTTGTTT
GTGTAAGCCCGCCATATAAAAAAGAGAACTTTGAGGCTTCCAGCTATGAA
GATATTTCACAGTGGGTAACTTCAGTTCCACCATGCAGGGGTGAGAGTGT
CAAAGAGGTGAATGAACAGTCTGTGTGTGTCTGTGTGACTGTATGACTGT
ACGAGTGAGAAGGAGGCTGCTCGCAGAGAATTCATATGAACAAGTAAAAT
AACTAAATGGGAATTTTTACTTAATTTAATTCTTTGTTTACAGAACATGT
ACTTCAAACTTATTTAAACCCTATATAAATTATACCACTCCCCATTTACT
TTTTTTTCGCTTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_b21.g1 MSMg01no160_b21.g1 CHROMAT_FILE:
MSMg01no160_b21.g1 PHD_FILE: MSMg01no160_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:59 2005
         (285 letters)



>mm_chr9_45055793_45056477
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacattttggggaccagaagtgaaaatgttctgtctgctcagaggaacagcaaaccaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacattttggggaccagaagtgaaaatgttctgtctgctcagaggaacagcaaaccaac 260

                                                                       
Query: 61  aaaacaatgtgggagtgcagtgctggagaccaaagccttggtggtccctgcccttctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacaatgtgggagtgcagtgctggagaccaaagccttggtggtccctgcccttctcac 320

                                                                       
Query: 121 tcacccattcaccccatccaccctgcttctgcggaaccatgggcttggcttccattccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacccattcaccccatccaccctgcttctgcggaaccatgggcttggcttccattccct 380

                                                                       
Query: 181 aaagccttggataggtcttcccgtgcataagcagagggctgctgggagaaaggtgggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagccttggataggtcttcccgtgcataagcagagggctgctgggagaaaggtgggtgg 440

                                                        
Query: 241 aaatggaagaagtccctcctcttctattttaagcctgactcttct 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatggaagaagtccctcctcttctattttaagcctgactcttct 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)