BAC Information

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BAC

Clone NameMSMg01-160M07
Chromosome9 (Build37)
Map Location 31,210,537 - 31,210,808
singlet/doubletsinglet
Overlap geneNfrkb
Upstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10
Downstream geneTmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160M07.T7 (MSMg01no160_m07.b1)MSMg01-160M07.TJ (MSMg01no160_m07.g1)
ACCAG360348AG360349
length691745
length of high quality
(start - end)
319 (11 - 329)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no160_m07.b1 PHD_FILE: MSMg01no160_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:49 2005CHROMAT_FILE: MSMg01no160_m07.g1 PHD_FILE: MSMg01no160_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATCGGGAGAGGATCCGCGGAATTCTACCTCTGCCGAGCGAATCG
TTGTAGGTGCCAGGAAGGGGCTAATGGTCCTTCTTGCTCTCGGATGACAC
AGAATTCTTTATGTTCCAGAAGAACTGACTATGTGGTTCGGCCTAGCACA
GGAGAGGAGAAACGGGTTTTTCAAGAACAGGTAAGATCTCCTTAGAAGTA
AGTAGACACAGAAGCACTGAGCCTGGCTTTCCTTGATCTCAACTCCTTGG
GGTTCAGAGCCTTCAATCCAGATAGTTCATTGGTCGAGGCTGTTTGTTGG
GGTAGAAATAGTTTGGTGAAAGGGTAAGATTTTTCTTGCCCCCCCCCCCC
CACCAGNTAGCAAAATGTATTTTCCTTTCTTGTCGTACCCCCCCAGAACA
ACTGTGGACTGTCTTTTCCCTCTGCGTTTGGTCACTGTTCTTTGTGAGGT
CACTCCTTTCCTCCTTGTATTTGACGTCCCATTTGATCGATCTATTGGTG
CTCTAGGTTAGAATTCCACTAATTCTGACATATCATTTTTGTGCCTTTTT
TTTTTTTTTTTTTGCCCGTCCAGTTGCTTGTATCGCCGAAATCCATTATG
TCGTTCCCCTCCCTCCTCTGTTTGTCCCCCTTTTCTTTCGTTATTTTCTA
TTCCGCTCCTTATTCCTTTTATAATTTTCTCCCTTAGTTTT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATG
AATGGGTGTTGGATTTTGCCAAATGCTTTCTCAGCATCTAATGAGATGAC
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGCTTACATTGATGG
ATTTCCCTATATTAAACCATCCCTGTATCCCTGGGATGAAGCCTACTTGA
TCATGATGGATGATCGTTTTGATGTGTTCTTGGATTTGGTTTGCAAGGGT
TTTGTTGATCATTTTTTTTTCTATATTCATAAGGGAAACTGGNCAGAAGT
TTACATAACTCCCTGAGCGATTCCCCCGGAGAAAGAAAAAAAGAAAGTGG
GGTTGGGGCCCCCCCAAAAAAAAAAAAAAATTTTGCGGGGTGGGCCTCCT
TTTTCTCTCCTTCTCTTTCTTTTTTTTCCCCCCCCCTCCTCCCTTACACC
TTTCTCAACTACCCTTTTGTCCTCTCTCTCTTTTTTTCTTCTCTTTTTTA
CTTTTTTTCTTTTTCCCCCCCTTTCATCTTTTATTTTTTTATTTCCCCCA
TTTTTTTTATTTTTATCGCTGAACCCCTCTTATTTCTTTATTTAATTTTC
CATCTCCCCTCTTCTACACATCCCTTTCTTCCTATTTTTATTCCTGACCG
TCCTCCTCTATCTTCACTTTTTTTTCTTTCTCTGCTCCCCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_m07.b1 MSMg01no160_m07.b1 CHROMAT_FILE:
MSMg01no160_m07.b1 PHD_FILE: MSMg01no160_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:49 2005
         (319 letters)



>mm_chr9_31210290_31211008
          Length = 719

 Score =  526 bits (272), Expect = e-154
 Identities = 272/272 (100%)
 Strand = Plus / Plus

                                                                       
Query: 48  tgccaggaaggggctaatggtccttcttgctctcggatgacacagaattctttatgttcc 107
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgccaggaaggggctaatggtccttcttgctctcggatgacacagaattctttatgttcc 307

                                                                       
Query: 108 agaagaactgactatgtggttcggcctagcacaggagaggagaaacgggtttttcaagaa 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agaagaactgactatgtggttcggcctagcacaggagaggagaaacgggtttttcaagaa 367

                                                                       
Query: 168 caggtaagatctccttagaagtaagtagacacagaagcactgagcctggctttccttgat 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 caggtaagatctccttagaagtaagtagacacagaagcactgagcctggctttccttgat 427

                                                                       
Query: 228 ctcaactccttggggttcagagccttcaatccagatagttcattggtcgaggctgtttgt 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctcaactccttggggttcagagccttcaatccagatagttcattggtcgaggctgtttgt 487

                                           
Query: 288 tggggtagaaatagtttggtgaaagggtaaga 319
           ||||||||||||||||||||||||||||||||
Sbjct: 488 tggggtagaaatagtttggtgaaagggtaaga 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)