BAC Information

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BAC

Clone NameMSMg01-161D08
Chromosome9 (Build37)
Map Location 77,373,622 - 77,464,131
singlet/doubletdoublet
Overlap geneLrrc1
Upstream geneC530008M07Rik, Tinag, LOC436082, 2310046A06Rik, 5730403I07Rik
Downstream geneKlhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161D08.T7 (MSMg01no161_d08.b1)MSMg01-161D08.TJ (MSMg01no161_d08.g1)
ACCAG360671AG360672
length1,2601,236
length of high quality
(start - end)
422 (30 - 451)379 (73 - 451)
definitionCHROMAT_FILE: MSMg01no161_d08.b1 PHD_FILE: MSMg01no161_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:33 2005CHROMAT_FILE: MSMg01no161_d08.g1 PHD_FILE: MSMg01no161_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,373,622 - 77,374,028)(77,463,753 - 77,464,131)
sequence
NNCCCACACTGCGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTC
TGTTTCCACAACACGGTAGGCTGAAGCCCAAGGGTTGTCTTTCACTGCTA
GCACTGCGAACAAATACAAATCAAATACCTTAAAATGTGCCGTGACTGTC
TCTCAGTAAGATCAAGATCATACTGCCCAAAGCAAAAAAGTTTTTGAGGA
ACGTTTGCCCACTGACTGCTAGTGCCTTAATTTCCCTACAGGCACAAGGG
GATGCTGGTCTCGCTGTCCAGAGTCAGTTCCTGGGCCTTGGTGGGCCAGC
ATTATAAGCAAGTGTCACCATATTTCAATTCCCTGAACAGAGGGGACCTG
AGTTAAACCTCAGGTACTACAACAGCTCCTTAGAACACGCTCAGCTTGTG
TGCTCTCCCTTCCACTCTCCCTGCCCTGTGTGTGTATGTGTGTGCGTGCA
TTTTTTTTTCCCCCCCCCGGGTATGTGTCTATATATACACAAAAAAAGGA
GAAGAAACAAGAGTATAAGGCAGAGGCGAGAATCGTAAATCTCACTTAGG
AAACCATGAAGGGGAGCCTGACAGACTCCTGACTTGCAGTGACGTGACAC
TCTTTTATCACGGGCATGAAGGAGAACCATTACACCCAGAGTCTATGTGC
CTCATACAGTAGACTGTGTGCAAGCAACTGTAGTACAGGGTTCTTAGTCT
TGGGTGTTCTGTACTCCCTCTGACAAATGTATGAGCACTTGGGAAACTGG
AACCCTTTCTTTTCTGACAATAATTAGCATCAGAACAGAGCTGCAACAGA
GCTGGTGCTTTGTTTATAGTCACTGCAGTCCTCATAATGCCTGTGAGGAA
TTTATCATTTCTCACTTAAGGAAAAAAACCAACCAACTGAGGCTCAAAAA
TGTTAACTAGCTCTGCAGGATCACATCACCCTTAGGTAGTAAAAAATGGA
TACCAAACCTTCCTGTGTATAATACCCAAGGCCCAATACACCTATACCTT
CCAAAACAGGGGCCCCATGGAACATCTCCATTAACCCTAAAATGGTTTCT
CTAAAAACCACCCCTCTTAAACCCCCTGGTGCTGGTCCCTAAATTAATCT
ACCCCCAAGAAAGGATACCCCCCCTTTTGTTTTTTACAAAAATCTACTAA
TTCTTGCTGTGATACCCCCCTTATATGTCTCCTTCCTATGGTACTCCACC
AACTCTTGTGTTTTAATCCCCTCTCACAAAACCTCTCTCTGTTGTGTCCA
CCTCCTTTTA
NNNCCTTCATTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGTGAGGGAAGTCAGGACTATGCAGA
AATAAATTCTTCATTTTATTGTCATTGGGATGATCCCTAAACACAGTGCC
CTCTTGGCACCCTCTGAGGTCACCTGCTAAGAGCTGTGTAAGAACAGTTC
TGAGCTGGTCTCCGAGTCTCTCAAATATATGGGTTTTGTTTTATTTTTCA
GGTTCAGATGCACTAAACAGCAGCTCTTGCACCTGTTCTATTGGCCCTGC
CCAAAGGAAGGCCACTCTAAAAATAGATCCGAGGGAACAAATGGTTTGCA
TGGTTGACTATTTTGAGGTACCAAGGGAGAAGGAGTCAAAGCTGAAGTGT
ATTATTAAGGGGAATAAGTAGTGTAAGAACTGTGGAGACGTTTGGGGGTT
ATTTTTTTTTCCCCCCCCACCATAGAGACTGGCCTAAAAAAAAAAAATTT
CCAGTAACCCGATGGCTTAAATGTAGCTTTCTTGGGTGGTTTTACATACA
GCAAAGTTCTCAGTATCTGAGGGACACAATTTAAATCTCTTTCAGAATAG
ACCAGAGTTTTAAAAATAGGGTCAGTGTCCAAGTTTTTCGACTCACCTGA
AAACATTTGGTTCCTGAGACTCTGTTGATTAGCACAGTACAATCTGACTC
CTAGCCCAGGCTGTAATACAACCCTGGCTGTGTTTGTGAGCTCACAATCC
AATGTCTTACCTAGGAGTTTCCACCTTCAGTGGGCTCTGACGGCTTCCCT
TTTGCTTGGTAGCTGGTATGAACTAAACAAGAGGGAATTAAATTTATGCC
AGTCGAACACAATCCCTATGAGTGGAACTCCCCAGTGCTCATAATTTTTT
TTCAGCTTTAATGAATTCTTTTTAAGGTTTTGTGCCAGCTTATTTTATAT
ATTGAGCCACTTCCTTTTTTAATTTCCCGTTTCAGCCCCCTTCTTTTGGC
TGGGAAAAAAACCCTTGGGCCACGGACCTGGGAATTTTTTTTTAAACAAA
GTTTTTTTTAGGGGCCTTGGTTTCACGTTTCAAAGGTTTAGGCTCTTTTT
TTCTTATAAGGAAATTGGTGGTGTGTCCTGTTCTTTAAACTTTCCCCAAA
TTATAAACTCTTTGTTTTTTTTTGTCCTTTCTTAACTTCTTTTCCCTCTA
CCNTATTCTTTCCTTTTCCTTTCTTATTCTTACTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_d08.b1 MSMg01no161_d08.b1 CHROMAT_FILE:
MSMg01no161_d08.b1 PHD_FILE: MSMg01no161_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:33 2005
         (422 letters)



>mm_chr9_77373407_77374228
          Length = 822

 Score =  772 bits (399), Expect = 0.0
 Identities = 405/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattctgtttccacaacacggtaggctgaagcccaagggttgtctttcactgctagcac 75
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 216 gaattctgtttccacaacacggtaggctgaagcccaagggctgtctttcactgctagcac 275

                                                                       
Query: 76  tgcgaacaaatacaaatcaaataccttaaaatgtgccgtgactgtctctcagtaagatca 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgcgaacaaatacaaatcaaataccttaaaatgtgccgtgactgtctctcagtaagatca 335

                                                                       
Query: 136 agatcatactgcccaaagcaaaaaagtttttgaggaacgtttgcccactgactgctagtg 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agatcatactgcccaaagcaaaaaagtttttgaggaacgtttgcccactgactgctagtg 395

                                                                       
Query: 196 ccttaatttccctacaggcacaaggggatgctggtctcgctgtccagagtcagttcctgg 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ccttaatttccctacaggcacaaggggatgctggtctcgctgtccagagtcagttcctgg 455

                                                                       
Query: 256 gccttggtgggccagcattataagcaagtgtcaccatatttcaattccctgaacagaggg 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gccttggtgggccagcattataagcaagtgtcaccatatttcaattccctgaacagaggg 515

                                                                       
Query: 316 gacctgagttaaacctcaggtactacaacagctccttagaacacgctcagcttgtgtgct 375
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 516 gacctgagttaaacctcaggtacttcaacagctccttagaacacgctcagcttgtgtgct 575

                                                          
Query: 376 ctcccttccactctccctgccctgtgtgtgtatgtgtgtgcgtgcat 422
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ctcccttccactctccctgccctgtgtgtgtatgtgtgtgcgtgcat 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no161_d08.g1 MSMg01no161_d08.g1 CHROMAT_FILE:
MSMg01no161_d08.g1 PHD_FILE: MSMg01no161_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:33 2005
         (379 letters)



>mm_chr9_77463553_77464331
          Length = 779

 Score =  710 bits (367), Expect = 0.0
 Identities = 376/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtgagggaagtcaggactatgcagaaataaattcttcattttattgtcattgggatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tctgtgagggaagtcaggactatgcagaaataaattcttcattttattgtcattgggatg 520

                                                                       
Query: 61  atccctaaacacagtgccctcttggcaccctctgaggtcacctgctaagagctgtgtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atccctaaacacagtgccctcttggcaccctctgaggtcacctgctaagagctgtgtaag 460

                                                                       
Query: 121 aacagttctgagctggtctccgagtctctcaaatatatgggttttgttttatttttcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aacagttctgagctggtctccgagtctctcaaatatatgggttttgttttatttttcagg 400

                                                                       
Query: 181 ttcagatgcactaaacagcagctcttgcacctgttctattggccctgcccaaaggaaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttcagatgcactaaacagcagctcttgcacctgttctattggccctgcccaaaggaaggc 340

                                                                       
Query: 241 cactctaaaaatagatccgagggaacaaatggtttgcatggttgactattttgaggtacc 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cactctaaaaatagatctgagggaacaaatggtttgcatggttgactattttgaggtacc 280

                                                                       
Query: 301 aagggagaaggagtcaaagctgaagtgtattattaaggggaataagtagtgtaagaactg 360
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 279 aagggagaaggagtcaaagctgaagtgtattagcaaggggaataagtagtgtaagaactg 220

                              
Query: 361 tggagacgtttgggggtta 379
           |||||||||||||||||||
Sbjct: 219 tggagacgtttgggggtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)