Query= MSMg01no161_f01.b1 MSMg01no161_f01.b1 CHROMAT_FILE:
MSMg01no161_f01.b1 PHD_FILE: MSMg01no161_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:47 2005
(428 letters)
>mm_chr9_112265819_112266647
Length = 829
Score = 719 bits (372), Expect = 0.0
Identities = 400/410 (97%), Gaps = 3/410 (0%)
Strand = Plus / Plus
Query: 19 gaattcccaccatctccatggcaatattcttcccaggaaatcagtactttcttggccaag 78
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 219 gaattcccaccatctccatggcaatattcctcccaggaaatcagtactttctttgccaag 278
Query: 79 agtaaacagtaagaactggggatcagagatggagagagagtgtaagtgggccaggagggt 138
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 279 agtaaacagcaagaactggggatcagagatggagagggagtgtaagtgggccaggagggt 338
Query: 139 gctgttgctacaagtcagagaagccaaa--gaccctccagcccttccatacggcaaagaa 196
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 339 gctgttgctacaagtcagagaagccaaaagga-cctccagcccttccatacggcaaagaa 397
Query: 197 aagtctggacacggaacctgagagtgtggtgctccaatctaaggcccgtgttggggcagc 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aagtctggacacggaacctgagagtgtggtgctccaatctaaggcccgtgttggggcagc 457
Query: 257 tgctgatattggttttagacactatttgattatactcttaactttagcttctgtagatct 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tgctgatattggttttagacactatttgattatactcttaactttagcttctgtagatct 517
Query: 317 agtggtctgttaagctaatacatcctaacagtttcattttacctgacaatcagaagtatt 376
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agtggtctgttaagctaacacatcctaacagtttcattttacctgacaatcagaagtatt 577
Query: 377 atgacagacagaggggccagcaagaagtgcctactaagataacccaagat 426
| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aggacagaaagaggggccagcaagaagtgcctactaagataacccaagat 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 829
Length adjustment: 9
Effective length of query: 419
Effective length of database: 820
Effective search space: 343580
Effective search space used: 343580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no161_f01.g1 MSMg01no161_f01.g1 CHROMAT_FILE:
MSMg01no161_f01.g1 PHD_FILE: MSMg01no161_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:47 2005
(188 letters)
>mm_chr9_112307880_112308467
Length = 588
Score = 271 bits (140), Expect = 2e-77
Identities = 176/188 (93%)
Strand = Plus / Minus
Query: 1 gaaatctttgctacttctgagccataaaagggatgtcttctaactcaaagaagggcccat 60
|||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||
Sbjct: 388 gaaatctttgctacttctgagccataaaagtgatgtcttctaactcagagaatggcccat 329
Query: 61 tgaaaaaggtcatcaaaaagatagatgactggaatttttgggggctcacaattatatctt 120
||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 328 tgaaaaatgtcatcagaaagatagatgactgggatttttggtggctcacaattatatctt 269
Query: 121 gaatatttctaaaacactcaaaagttaaatctggggggactaaggttaattctcaaacta 180
|||||||||||| ||||||| |||||||||||| || |||||| ||||||||||||||||
Sbjct: 268 gaatatttctaagacactcagaagttaaatctgtggtgactaatgttaattctcaaacta 209
Query: 181 tacaacct 188
||||||||
Sbjct: 208 tacaacct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space: 104400
Effective search space used: 104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
