BAC Information

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BAC

Clone NameMSMg01-163F03
Chromosome9 (Build37)
Map Location 92,930,749 - 92,931,032
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
Downstream geneLOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163F03.T7 (MSMg01no163_f03.b1)MSMg01-163F03.TJ (MSMg01no163_f03.g1)
ACCAG362172AG362173
length741739
length of high quality
(start - end)
361 (381 - 741)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no163_f03.b1 PHD_FILE: MSMg01no163_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:54 2005CHROMAT_FILE: MSMg01no163_f03.g1 PHD_FILE: MSMg01no163_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTAATCCTACTAAGATTTTAATCCTATTGCACTGGAAAATTCC
AAATTTTCCTGGAAAGTGGAAACTGGAAAAAAGGAAAAAACAGGTGGAAT
CACCATGCCTGACCTAAAATTGTACTACAGACCAATTGTGATAAAAACTG
CATGGTACTGGTATAGCGACAGACAAGTAGACCAATGGAACAAAATTGGA
GACCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTTAACAAGGG
AGCTAAAATCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGATGCT
GGCACAAACTGGTGGTTATCATGCACAACAATGCGAATTGATCCATTTCT
ATCTCCTTATAATAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAA
AACCAGAGACACTGAAACTTATATAGGAGAAAGTAGGGAAAAGCCTCGAA
GATAAGGGTACAGGGGGAAAATTCCTGAATAGAACAGCAATGGCTTATGC
TGTAAGATCGAGAATTGATAAATGGGACCTCATAAAATTGCAAAGCTTCT
GCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGG
GAAAGGATCTTTACCTATCCCAAATCAGATAGGGGACTAATATCCAATAT
ATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAAATAATGCCTCTGTGAAC
ATGTAGAATAAAAAGAAGTTCAACTCAAAATATTTTTGAGAATAATAGAA
GAAGATAAAATAGGCTAATTGCAGAGTGGATCCATTCTGGAGGCCTTCCC
TGACTGGCCTATTTGACATGCGTACTCTTATATTTAGTTTGCCAGTCACA
CTTGCCTCAGCATTTCAGTGAAGATAAATGATAACTGCCAGTAATTAGCT
AATAGGTAATTTGTCCATTCATCATTATACTGCTGTTTTCTTCTACTTTG
TTTATTGCATTATGAATTTCTCTCTCCACCCTCCAATTTCTGAAACAATG
GGGGCAATTTTGCAATAGATATTAACCCCTTGAATATCCAAGTTGAACAA
GTAGAAGAGGCTTTCATTGTTAAAAATTTTAATCTATGATTGGAGAAAAA
ACTTGTAAAATAAGACCCACAAAAAAAAACATAATGTGAAACTATAATCC
AGAGTGAATCAGAAACTACACACATTTTGTAGTTATAGTATTCCAATTTA
CTCATATACTCAGGAAGACAACAGACAGGTTAACTCATTTATCTAAGTTT
CTATTTCACTGTAACAGACATTTTTAAAATTTATTATATTTTTTCATGTA
CATGTATATGTCTCTCTCTCTGGGTCTCTTTATGTATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_f03.g1 MSMg01no163_f03.g1 CHROMAT_FILE:
MSMg01no163_f03.g1 PHD_FILE: MSMg01no163_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:54 2005
         (288 letters)



>mm_chr9_92930547_92931234
          Length = 688

 Score =  518 bits (268), Expect = e-151
 Identities = 280/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   taaaaataatgcctctgtgaacatgtagaataaaaagaagttcaactcaaaatatttttg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 taaaaataatgcctctgtgaacatgtagaataaaaagaagttcaactcaaaatatttttg 262

                                                                       
Query: 63  agaataatagaagaagataaaataggctaattgcagagtggatccattctggaggccttc 122
           |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 263 agaataatagaagaagataaaataggctaactgcagagtggatccattctgcaggccttc 322

                                                                       
Query: 123 cctgactggcctatttgacatgcgtactcttatatttagtttgccagtcacacttgcctc 182
           |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 323 cctgactggcctgtttgacatgcatactcttatatttagtttgccagtcacacttgcctc 382

                                                                       
Query: 183 agcatttcagtgaagataaatgataactgccagtaattagctaataggtaatttgtccat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agcatttcagtgaagataaatgataactgccagtaattagctaataggtaatttgtccat 442

                                                       
Query: 243 tcatcattatactgctgttttcttctactttgtttattgcatta 286
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcatcattatactgctgttttcttctactttgtttattgcatta 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)