BAC Information

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BAC

Clone NameMSMg01-166C10
Chromosome9 (Build37)
Map Location 110,400,413 - 110,553,550
singlet/doubletdoublet
Overlap geneKif9, Setd2, Nradd, Nbeal2
Upstream geneLOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18
Downstream geneCcdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166C10.T7 (MSMg01no166_c10.b1)MSMg01-166C10.TJ (MSMg01no166_c10.g1)
ACCAG364065AG364066
length737736
length of high quality
(start - end)
320 (47 - 366)270 (77 - 346)
definitionCHROMAT_FILE: MSMg01no166_c10.b1 PHD_FILE: MSMg01no166_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:33 2005CHROMAT_FILE: MSMg01no166_c10.g1 PHD_FILE: MSMg01no166_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,553,235 - 110,553,550)(110,400,413 - 110,400,682)
sequence
CTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCAAGTATGCCAGTAATGAAGGACTCAGAAGTTAGGTCAGAGT
AGAAGCTCTTTAGTTTTGCTCACCTTTCTCTCTTCTTTTATCCTTGACCA
GTGCTATCTCTCCTGTCTCATGGAAACTTACCAGGCCTCTCTGCTCCTCT
AGACCCATTAGATGTCCTGGAAGTGGAATTACAGTCAGTTTTGAGTCACC
GTGTAGGTGCTGATAATAGAACCCAAGGCTTCAGGAAGACCATACAATGC
CCCTAACCACTGGGCCACCTCTAGTCCCTCCACCTTACTAATTATCTAGT
TAGACAGTTTTTTCCTACGCCGCCCTTGATGATCTGGAACTGATTATGTA
GGCCAGGTTGCACTTGAACTCAGAGATCTGCCTGTCTCTGCTTTCTGATC
ACTGTGTCATTCTCAAGAATTGAACTCAGGTTGTCAGCCTTGGTGACAGT
GCCCTTACCTGCTAAGCCATCTCACCAAGTCCCCAGTGTATTGGTTAAGC
TAGACTGGCCAATGAGCTTAAGGGCTCTGCCTGTGGTGGCGTCCTGCCCC
TGCCTCTCAGAGCTGAGGTGATGGATGCGTGCCCTGGCTCTTGTGGTGCT
GGGGAACCTATACTCACACTTGTGCAGGGGGCTTTACCGGCTTATGCAGA
TTCCTACGTCTTCCGTTTATTTTTGGTAGTTGCTCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTAGGTAAAATGGGTTATTTCC
AGGGATGCTGTGAGGCAAGCCGTGACTGTAGAGCCTCTAGCCTGTATGCA
TTAGGGACTGTCCCAGCACAGGGAGAGTGTTCTTGCCACACATTCAGTGC
CCTGGGATTTGGCAGGTCAAACCAAAGAGCTCCAGCTGACGTGAGACTGC
ACCTCCAGGGAAAGGGTTTAGGAACCTCCTGGTCTCATCTCATAACAAAG
CACAATTGAGCCCCAAGGGGAGCTCTAACTACTTTAACCTCTAGGCTGCC
TTATGAAGAAAGCTGCTGTTGACAGCTCTATCCATGCTTTGAATAGGTCA
TCACCTACGCTGGAACGTTTTAGACAATGGACCCTTTTGGTGCTTACTCC
TTGCCATGTCTGTGAAAAAAAGACATGATGTGCGATACGGGTGTAAAGGT
ACTTGGTTGGTTTTGTACTACATTTTCTTATAGGTTTATGGTTTTAACAA
TGTCTCTTGGATATCTGGGAACGCGAACACCATATGATGCTGTGTGACCA
CGGTTATGTCTCTGACGGTATGCTGTTCTTTTGTATCGTTAACTTGTATA
GTAGTTATGTTGTCGCATCTTACCATTTACTATTTCTAACGCGTCAACGA
GTGCCAGGTCTTCATCGCGGCGCGCTTTTATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_c10.b1 MSMg01no166_c10.b1 CHROMAT_FILE:
MSMg01no166_c10.b1 PHD_FILE: MSMg01no166_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:33 2005
         (320 letters)



>mm_chr9_110553192_110553911
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccaagtatgccagtaatgaaggactcagaagttaggtcagagtagaagctctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaattctccaagtatgccagtaatgaaggactcagaagttaggtcagagtagaagctctt 300

                                                                       
Query: 65  tagttttgctcacctttctctcttcttttatccttgaccagtgctatctctcctgtctca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tagttttgctcacctttctctcttcttttatccttgaccagtgctatctctcctgtctca 240

                                                                       
Query: 125 tggaaacttaccaggcctctctgctcctctagacccattagatgtcctggaagtggaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tggaaacttaccaggcctctctgctcctctagacccattagatgtcctggaagtggaatt 180

                                                                       
Query: 185 acagtcagttttgagtcaccgtgtaggtgctgataatagaacccaaggcttcaggaagac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acagtcagttttgagtcaccgtgtaggtgctgataatagaacccaaggcttcaggaagac 120

                                                                       
Query: 245 catacaatgcccctaaccactgggccacctctagtccctccaccttactaattatctagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 catacaatgcccctaaccactgggccacctctagtccctccaccttactaattatctagt 60

                           
Query: 305 tagacagttttttcct 320
           |||||||  |||||||
Sbjct: 59  tagacagggttttcct 44


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no166_c10.g1 MSMg01no166_c10.g1 CHROMAT_FILE:
MSMg01no166_c10.g1 PHD_FILE: MSMg01no166_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:34 2005
         (270 letters)



>mm_chr9_110400213_110400882
          Length = 670

 Score =  522 bits (270), Expect = e-153
 Identities = 270/270 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttaggtaaaatgggttatttccagggatgctgtgaggcaagccgtgactgtagagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttaggtaaaatgggttatttccagggatgctgtgaggcaagccgtgactgtagagcct 260

                                                                       
Query: 61  ctagcctgtatgcattagggactgtcccagcacagggagagtgttcttgccacacattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagcctgtatgcattagggactgtcccagcacagggagagtgttcttgccacacattca 320

                                                                       
Query: 121 gtgccctgggatttggcaggtcaaaccaaagagctccagctgacgtgagactgcacctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgccctgggatttggcaggtcaaaccaaagagctccagctgacgtgagactgcacctcc 380

                                                                       
Query: 181 agggaaagggtttaggaacctcctggtctcatctcataacaaagcacaattgagccccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggaaagggtttaggaacctcctggtctcatctcataacaaagcacaattgagccccaa 440

                                         
Query: 241 ggggagctctaactactttaacctctaggc 270
           ||||||||||||||||||||||||||||||
Sbjct: 441 ggggagctctaactactttaacctctaggc 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)