BAC Information

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BAC

Clone NameMSMg01-166P04
Chromosome9 (Build37)
Map Location 90,711,348 - 90,711,689
singlet/doubletsinglet
Overlap genenone
Upstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166P04.T7 (MSMg01no166_p04.b1)MSMg01-166P04.TJ (MSMg01no166_p04.g1)
ACCAG364609AG364610
length784756
length of high quality
(start - end)
348 (44 - 391)248 (77 - 324)
definitionCHROMAT_FILE: MSMg01no166_p04.b1 PHD_FILE: MSMg01no166_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:35 2005CHROMAT_FILE: MSMg01no166_p04.g1 PHD_FILE: MSMg01no166_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCTTGTTCTTGTCCTTAATAGTTTTTAAGAGAAGAAATAAAACAAAT
GATTTTGTATGAGTCAATTCTCAAGGAAAATATTGCAAAATGATTAAAAT
ATATAATTCTAAATTCTAAATATTGAGTTGAACCACATTTGTTCAATAGA
TTTATTCTCTTGAGGGCTTGATAAATAACAATTACTTTGTGTTTATAACT
TAATGTAAATAATAAAATTAAAATTTAATCGCTTAGAATATTTTTCGCTT
ATTTCTATTGTGTGATATATTCTTTGTCATCCATTCCTAAGTTAACACAA
AAGAGCACTATTAAATAATGCTTCTCTAATGTTAATATATAAAGAATAAC
AACATTTGAGGCTTGCCCCCCCCCNCAAAAACATGATTTGTAGTATTTTC
CACAAATCTCTGTTTTAACTACACTTATATAATATATACTTATTATAACC
CACGCACATTTTTATTTTTAAAAATTCATTTTTCTTCTTGAGATTTTTCT
TTATTTCCCTTCTTTTTGCACCCAACTTTACTCTGTCCATATTCCCCCTT
TCCCGTTTTTCCTCCCTATTTTACCCCTATTTGACCCCTTCCTCACCTTT
TTTTTTCCCCCCGTTTTACCCCCCCTTCATTTATCCCCCACTTTTTTTCT
TTTCCCTCTTTTCTCTCTCTCTTTCCACTTTTTTCCTCCCCCCCTCCCTT
TTTTTGTTTTTCCCCTCTCTTTATTTCCACCCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCAT
CATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGT
GTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGG
TCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCA
ATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCT
GTTGATTTTGTTACCCTCTATCATCTGGCGTGGGAGACAAGCTCTCTTCT
CTGAGTTTCATTGGTCAGAGCAGCCTCTGTAGGCTAGTTCTCCTCTCTCA
GGGAAGGTGAACGCCCCCCCCTTTTTNNGACCTTCCCCTTGGCCGCTTCT
TGTTGTCTTTATCATGACTCTTCTCTCACTTTTCGTTGTCTTGCCCCTTT
TTTTTTCCTTTTTTCTTGTTGCCTCTTCTTCGTTACTTCATTCGACATTC
TTCCCCCTTTTTTCCTTCTCTCCGGATGTTTTTTCTTCTTTCCTATCTTT
ATCCACTATTCCTATTATATATGTTACTTTCTTTCCTTCTTATCCCCTCT
TTTTGTATCTTTTACTATCTTATAATTTTTGTTTTGCTTGTTTATGTCGC
GTGTTCGCTTTGATAGTTCTTCTGCCGTAGTACTTTTCTCTTTTGTTTTT
GCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_p04.b1 MSMg01no166_p04.b1 CHROMAT_FILE:
MSMg01no166_p04.b1 PHD_FILE: MSMg01no166_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:35 2005
         (348 letters)



>mm_chr9_90711278_90712025
          Length = 748

 Score =  627 bits (324), Expect = 0.0
 Identities = 338/344 (98%), Gaps = 4/344 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcttgttcttg--tccttaatagtttttaagagaagaaataaaacaaatgattttg 64
           |||||||||||||||  |  |||||||| |||||||||||||||||||||||||||||||
Sbjct: 412 gaattcttgttcttggtt--ttaatagtgtttaagagaagaaataaaacaaatgattttg 355

                                                                       
Query: 65  tatgagtcaattctcaaggaaaatattgcaaaatgattaaaatatataattctaaattct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tatgagtcaattctcaaggaaaatattgcaaaatgattaaaatatataattctaaattct 295

                                                                       
Query: 125 aaatattgagttgaaccacatttgttcaatagatttattctcttgagggcttgataaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aaatattgagttgaaccacatttgttcaatagatttattctcttgagggcttgataaata 235

                                                                       
Query: 185 acaattactttgtgtttataacttaatgtaaataataaaattaaaatttaatcgcttaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 acaattactttgtgtttataacttaatgtaaataataaaattaaaatttaatcgcttaga 175

                                                                       
Query: 245 atatttttcgcttatttctattgtgtgatatattctttgtcatccattcctaagttaaca 304
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 atattttttgcttatttctattgtgtgatatattctttgtcatccattcctaagttaaca 115

                                                       
Query: 305 caaaagagcactattaaataatgcttctctaatgttaatatata 348
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 caaaagagcactattaaataatgcttctctaatgttaatatata 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)