Query= MSMg01no168_a15.b1 MSMg01no168_a15.b1 CHROMAT_FILE:
MSMg01no168_a15.b1 PHD_FILE: MSMg01no168_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:59 2005
(408 letters)
>mm_chr9_56533960_56534772
Length = 813
Score = 688 bits (356), Expect = 0.0
Identities = 395/410 (96%), Gaps = 5/410 (1%)
Strand = Plus / Plus
Query: 4 ggaattcctaagtgctaggtgtgccataggtaccagcaatgcacgacacgagggcatgag 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaagtcctaagtgctaggtgtgccataggtaccagcaatgcacgacacgagggcatgag 263
Query: 64 ggcgtgac--agaggagtctggccctgccacaaagccaggtgataagcagaaaaacaaga 121
|||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 264 ggcgtgacatagaggagtctggccctgtcacaaagccaggtaataagcagaaaaacaaga 323
Query: 122 cacttcctaagagtgtcaagctcagcgacaaccctaacatccagccacagaggagggaac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacttcctaagagtgtcaagctcagcgacaaccctaacatccagccacagaggagggaac 383
Query: 182 ---agaaggacaggggggcgctctagatagagggtcaggggaggtcttcctgaagggggc 238
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 aggagaaggacagggggacgctctagacagagggtcaggggaggtcttcctgaagggggc 443
Query: 239 cacaattgaacttaggcttcaggaagtgaggcttccaggagcctgaggcactgaaggcca 298
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cacaactgaacttaggcttcaggaagtgaggcttccaggagcctgaggcactgaaggcca 503
Query: 299 agatggggcctttggctctgatcccaagaacaagaaaagccactggagggccttaaccat 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agatggggcctttggctctgatcccaagaacaagaaaagccactggagggccttaaccag 563
Query: 359 ttttatgcaatgatgtttttcttcattgttaaaagtcctctcaagctgcc 408
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ataaatgcaatgatgtttttcttcattgttaaaagtcctctcaagctgcc 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 813
Length adjustment: 9
Effective length of query: 399
Effective length of database: 804
Effective search space: 320796
Effective search space used: 320796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no168_a15.g1 MSMg01no168_a15.g1 CHROMAT_FILE:
MSMg01no168_a15.g1 PHD_FILE: MSMg01no168_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:59 2005
(375 letters)
>mm_chr9_56687249_56688023
Length = 775
Score = 640 bits (331), Expect = 0.0
Identities = 364/375 (97%)
Strand = Plus / Minus
Query: 1 tccctggaacctccaaccccactcccacttcttctccagagaggggaatcacaggagccc 60
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct: 575 tccctggaacctccaaccccaatcccacttcttctccagagagggaaatcacaggggcag 516
Query: 61 agctctgtttcacaggagacacaactgctgtgagattcctccccgataccagacagttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agctctgtttcacaggagacacaactgctgtgagattcctccccgataccagacagttct 456
Query: 121 ctgcacccctgcttgtcgtcagcctgaagatagcgtcgggggagacagaggcatggactc 180
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 455 ctgcacccctgcttgttgtcagcctgaagatagcgtcgggggagaccgaggcatggactc 396
Query: 181 tgagggacagaagggacaagagccagaagcagggaggtggggctggaggggaggaggatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgagggacagaagggacaagagccagaagcagggaggtggggctggaggggaggaggatg 336
Query: 241 ccagagacagacaggtgtgaaagagccagactgagagctttccagaagtttccagagaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ccagagacagacaggtgtgaaagagccagactgagagctttccagaagtttccagagaca 276
Query: 301 gagacagagcagggacaataagtgttttttgaagacggggagatgggacagttaaccggt 360
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 275 gagacagagcagggacaataagtgaggtatgaagacggggagatgggacagttaaccggt 216
Query: 361 ctcagacgcttgctt 375
|||||||||||||||
Sbjct: 215 ctcagacgcttgctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
