Query= MSMg01no168_b14.b1 MSMg01no168_b14.b1 CHROMAT_FILE:
MSMg01no168_b14.b1 PHD_FILE: MSMg01no168_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:05 2005
(309 letters)
>mm_chr9_55985231_55985941
Length = 711
Score = 536 bits (277), Expect = e-157
Identities = 298/307 (97%), Gaps = 6/307 (1%)
Strand = Plus / Plus
Query: 5 gaattcttgacccaatctctcataaaattcagagagtgacaaacattactttgccctttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgacccaatctctcataaaattcagagagtgacaaacattactttgccctttg 264
Query: 65 tcataccaagtcctcatggacagtgaagaatctcagttattgaatttaaaaggcagggat 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcataccaagtcctcatggacagtgaagaatctcagttattgaatttaaaaggcagggac 324
Query: 125 gggacttacacctacaactctggctccttttcccagagggcacataagcaccaggagcac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggacttacacctacaactctggctccttttcccagagggcacataagcaccaggagcac 384
Query: 185 caggtaaaaccctgtcctctgcctaccaactcctattaaagcacactcaacagccctaaa 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taggtaaaaccctgtcctctgcctaccaactcctattaaagcacactcaacagccctaaa 444
Query: 245 gt-caccctgtgctctggactccatatttt---acaactactgcagaagctactgaagct 300
|| ||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 445 gttcaccctgtgctctggactccatagt--cacacaactactgcagaagctactgaagct 502
Query: 301 ttcctgg 307
|||||||
Sbjct: 503 ttcctgg 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 711
Length adjustment: 9
Effective length of query: 300
Effective length of database: 702
Effective search space: 210600
Effective search space used: 210600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no168_b14.g1 MSMg01no168_b14.g1 CHROMAT_FILE:
MSMg01no168_b14.g1 PHD_FILE: MSMg01no168_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:05 2005
(281 letters)
>mm_chr9_56063694_56064373
Length = 680
Score = 497 bits (257), Expect = e-145
Identities = 275/281 (97%), Gaps = 1/281 (0%)
Strand = Plus / Minus
Query: 1 ctaatctggatcctgaactccaagtcacaaatcaaatggtaaagacttacacattgcctt 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctaatctggatcctgagctccaagtcacaaatcaaatggtaaagacttacacattgcctt 421
Query: 61 ctcaaatatctcctaggttccaaatgagtttcttagccatgtgaacatttttgtagtaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctcaaatatctcctaggttccaaatgagtttcttagccatgtgaacatttttgtagtaat 361
Query: 121 ttaagcattaaaatacccgaccagcctgacaagtctcataacagattcctacagtgtgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttaagcattaaaatacccgaccagcctgacaagtctcataacagattcctacagtgtgga 301
Query: 181 gccctcagcatctacagtgtggaggcccaggcagcttcatatattaacatttcatctatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gccctcagcatctacagtgtggaggcccaggcagcttcatatattaacatttcatctatt 241
Query: 241 ttgtattgttgttgtaacaacatcacctatagggatggggt 281
||| | |||||||||||||||| ||||||||||||||||
Sbjct: 240 ttg-aaggttgttgtaacaacattgcctatagggatggggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 680
Length adjustment: 9
Effective length of query: 272
Effective length of database: 671
Effective search space: 182512
Effective search space used: 182512
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
