BAC Information

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BAC

Clone NameMSMg01-168G20
Chromosome9 (Build37)
Map Location 91,007,071 - 91,007,451
singlet/doubletsinglet
Overlap genenone
Upstream geneMorf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925, EG434428
Downstream geneLOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168G20.T7 (MSMg01no168_g20.b1)MSMg01-168G20.TJ (MSMg01no168_g20.g1)
ACCAG365613AG365614
length1,1641,169
length of high quality
(start - end)
349 (42 - 390)378 (70 - 447)
definitionCHROMAT_FILE: MSMg01no168_g20.b1 PHD_FILE: MSMg01no168_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:39 2005CHROMAT_FILE: MSMg01no168_g20.g1 PHD_FILE: MSMg01no168_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGCTATGGGCGCTATXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAAATCCAGG
TCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGGGCGT
TCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGATTCT
TACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATAGTT
GTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATCAGC
AGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCAGTC
TCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTACAGTTTTTTGTTGT
TTGGACCTCCTCCTGGCTGAAGGTGAAGGNCCAAAANAGTTTTTTTTTCC
CCCCCCCCCCNGNNNNGGNNNTNTTTTATAAAAAGAAAGGGGGTGTNNTN
TATGTTTTTTTTTTTGATGTTTTGTGTTTTTTGTTGTGTTGGTGGTTGTT
TGTTTGTTTTTGTTTTTTGTTGTTGTTTTTTATTTTTTGTTATTTTTTTT
TTTTTTTNATTTTTTGTTGTTTTTTTTTATTTTATTTGTTTTTTTTTTGT
TTTTTGTTTTTATTTTTTTTTTGTTATTTTTTATTATTTTTTTTTTTTTT
GTAATTTATATTTTTTTTTTTATTTTTATTTTTTTTTTTTTATTTTTATA
TTTTTTTTTTTTTTTTTTTTATTTATTTTTTTTTTTTATTTTTTTTTTTT
TTTAATTATTTTTATTTTTTTTTTTTTTTTTTTTTTTTTATTATTATTTT
TTTTTTTTTATTATTTTTTTTTTTTTATATTTTTTTTTTTTATTATTTTT
TTTGTTTTTTATTTTTTTATTTATAATTATTTTTATTTTTTTTTTTAGTT
TTTTTTTTATTTTTGTTTTTTTATTTTATATTTTTTATTTTATTTTATTT
TATTTTTTTTTATTTTTTTTTTTTTATTTAATTTTTTTTTTATTTTTTTT
TTTTTTTTTATTTTTTTTTTTTATTTTTTTTTTTTTATATTTTTTTTTAT
TTTTATTATTTTTTTTTATATTTTTATTTATTATTTTTTTATTATGGTTT
TTTTTAATTTTATT
NNNTTCTCAAGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTATCTCTAGTCATTTTTAAGTGTAAAAA
TGTGTCTCAGGGTGTACCACGTGAATGTGTATGTGCCCACAGAGGTCAGA
AGTCATTGTCATATGGACCTTGAGTTCTATATGGTTATCACTCTCATGAT
ATAGGTGCTGGGGTCTGAACTTAGTCCATTAGCAGAATAGGAAATGCTTT
TAACCACTGAGCCATTGCTCTAGTCTTCTCTCTCTCTAGTCATTTGGTAC
ACAATATAGTTCTAGGTTATCCATTAGAGTCCCATTTGACTTCATGGAAT
GATAAAAGGATATTTGTTGTAAAAAAAAAAGGTGGGGGTGGGGTCTGACT
GGGCACCCTATGCTTCAGTTTTGTCAGGACAATATTTATGTTAGTTTTTT
TTTCCCCCCCCCCAACCAAAGCACCCCTTCCTGAAAAAAAAATGTAAGAC
TTAGGAAATTGTGTAGGAATTGTGTAGTAGGCAAGAATTTGAGGGGAAGG
CCAGCCTGTAGGCAGCTACTTTTGAACAAGTGAGGCTGAACAAGTATCTT
GGTCATTCAGATTGTCAGTAGCATTTAGAATGCATTGTTTCATATAGTTG
TACAAGAGAGCAAAGATGCAGGAAATGGCCAACCAGTGATTGGCCCAAAT
TGAGACCCATCCCATGTTCAAGAAACAATCCCTGACACTATTAATATTAA
TCTATTATGCTTATAAACAGGAACATAGCCTAACTGTCCTCTGACAGGTT
CTATTCCACAGTAGACAGAATCAGATTCCAGAGATCCGCAGTCAAATGTT
AAATGAATTTCTTGAAATCTTGCAAAACATTTGAGGCTAGTATTGTAATA
CCTTTGAGTATAGGTATTCCTTTTGTATTACCTTAATTCCACTTTTCTTT
TCCTTTGTAATTTTCTCAAATTGATCTTTTCCTTGTTTTTATATGTTTTC
TCTTTATTCTCTCCCTTTTTTTTTTATTTTATTTCTTTTGTTTCTTATTT
TTTTTTTTTTTTTTTATATATTTTCCTCTTTCTCTTTTTTTTTTCTTCTT
TTTTTTTTCTTTTTTTCTTTTTTTTTTTTTTCTTTTCTTTCATATTTTTT
TTTTTTNTCCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_g20.g1 MSMg01no168_g20.g1 CHROMAT_FILE:
MSMg01no168_g20.g1 PHD_FILE: MSMg01no168_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:40 2005
         (378 letters)



>mm_chr9_91006871_91007654
          Length = 784

 Score =  675 bits (349), Expect = 0.0
 Identities = 371/381 (97%), Gaps = 6/381 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttatctctagtcatttttaagtgtaaaaatgtgtctcagggtgtaccacgtgaatgtg 60
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 201 ctttatctctagtcatttttaagtgtaaaaatgtctctcagtgtgtaccacgtgaatgtg 260

                                                                       
Query: 61  tatgtgcccacagaggtcagaagtcattgtcatatggaccttgagttctatatggttatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtgcccacagaggtcagaagtcattgtcatatggaccttgagttctatatggttatc 320

                                                                       
Query: 121 actctcatgatataggtgctggggtctgaacttagtccattagcagaataggaaatgctt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 actctcatgatataggtgctggggtctgaacttagtcctttagcagaataggaaatgctt 380

                                                                       
Query: 181 ttaaccactgagccattgctctagtcttctctctctctagtcatttggtacacaatatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaccactgagccattgctctagtcttctctctctctagtcatttggtacacaatatag 440

                                                                       
Query: 241 ttctaggttatccattagagtcccatttgacttcatggaatgataaaaggatatttgttg 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ttctaggttatccattagagtcccatttgacttcatggaatgatcaaaggatatttgttg 500

                                                                       
Query: 301 taaaaaaaaaa-----ggtggggg-tggggtctgactgggcaccctatgcttcagttttg 354
           |||||||||||     |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaaaaaaaaaaaaaggtggggggtggggtctgactgggcaccctatgcttcagttttg 560

                                
Query: 355 tcaggacaatatttatgttag 375
           |||||||||||||||||||||
Sbjct: 561 tcaggacaatatttatgttag 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 784
Length adjustment: 9
Effective length of query: 369
Effective length of database: 775
Effective search space:   285975
Effective search space used:   285975
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)