BAC Information

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BAC

Clone NameMSMg01-169I19
Chromosome9 (Build37)
Map Location 23,901,613 - 23,901,905
singlet/doubletsinglet
Overlap genenone
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893
Downstream geneNpsr1, Dpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169I19.T7 (MSMg01no169_i19.b1)MSMg01-169I19.TJ (MSMg01no169_i19.g1)
ACCAG366387AG366388
length688705
length of high quality
(start - end)
301 (46 - 346)234 (114 - 347)
definitionCHROMAT_FILE: MSMg01no169_i19.b1 PHD_FILE: MSMg01no169_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:16 2005CHROMAT_FILE: MSMg01no169_i19.g1 PHD_FILE: MSMg01no169_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
CATTCAGTTTTAAATATTCTCTAGGACCTGAAGTTGGAATAACCAAAGCC
ACAAGCCTGATTCTTTACAGTCACAGCCAATCTGTGAGCCATGTAGGCCA
ACCTTTGCTTTACTGCCCCCAATAACAGTTATGGGTTCTCTATCACAAAA
GAACACGACTTAGGAAAATATCCTGGGGAAGTCTTAGTGTGACTTATCCA
GCAGCAGGAAGAAGTCAGTGGGCTGGACAAGGGAAGACATTAAGTCCACA
AGAGAAGGGCTTCTTTATGCCAGAGCTGAGTAAGTGCATTCCTAAAGAAA
GTTTTCAATANNATCCCAAGACCCAANGACCAACCAAACACCTCTCTGCC
GAGGTTCTTCTGGCAAAGGAAAAAGAAAAGATGCTCAACCGCGGTTGGCA
AAGCAAAACAATTTAGGCAGAACTCAAATCTAGGGGCACAGACAGGAGAT
GACAATCCCGAAATATTGACAAGATTAAAGGGAAATTTTAAAAAATGGGT
GTATGTTTTCATTCTGATATAACTTAGTTGGCATGGTAACTTCAGAGAGC
AGAATGTCATGAGGTTGGAATCATACTTGGTGATATCCCTTTTATATTGG
GTTATTTTCAATGTGTTAACTTTGGGGGTGTTCATTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAGAAGTTGGACTCCAGAGAAACCAAACAACCCTATTAAAAAC
ATGGGATCCCCGCAGCTAAACAAAGAATTCCCAACTGAGGAATACCGAAT
GGCTGAGAAGCACATAAAAAAAATGTTCAGTATCCTTAATCATCAGGGAA
ATGCAAATCACAACAACCCTGAGATTCCACCTCACGCCAATCAGAATGGC
TAAGATCAAATATTCAGGTGACAGGAGATGCTGGCAAGGATGTGGAGAAA
GAGGGACTCTCTTCCATTGTTGGTGGAATTGCAAGCTTGTACAACCACTC
CAATAANTATTCCCCNGATCANTNACAAAATTAGACATAGCGCTATCTAA
GGACCCAACTATACCACCCCAGAAAATATACACTGAAGAGGCTCCAACAT
GCAATAAGGCCACATCCTCCACTATGTTCATAGCAGACTTATTTATAATA
GTTAGAAGCTGGAAAGAATCCAGATGTCCCTCAACAGCAGAATGGATAAA
GAAAATGTGGTACTTTTACACAATGGAGTACTACATAGTTATTAAAAACA
ATGAATTCATAAAATTCTTAAACAAATGGTTTGATCTGCAGGTTGTCATC
CTGAGTGAGGTATCCCATTCCTAAAAGAACACACATGATATGCACTCATT
GACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_i19.b1 MSMg01no169_i19.b1 CHROMAT_FILE:
MSMg01no169_i19.b1 PHD_FILE: MSMg01no169_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:16 2005
         (301 letters)



>mm_chr9_23901407_23902107
          Length = 701

 Score =  513 bits (265), Expect = e-150
 Identities = 286/293 (97%)
 Strand = Plus / Minus

                                                                       
Query: 7   attcagttttaaatattctctaggacctgaagttggaataaccaaagccacaagcctgat 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 attcagttttaaatattctctaggacctgaagttggaataaccaaagccacaagcctgat 440

                                                                       
Query: 67  tctttacagtcacagccaatctgtgagccatgtaggccaacctttgctttactgccccca 126
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tctttacagtcacagtcaatctgtgagccatgtaggccaacctttgctttactgccccca 380

                                                                       
Query: 127 ataacagttatgggttctctatcacaaaagaacacgacttaggaaaatatcctggggaag 186
           ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 379 ataactgttacgggttctctatcacaaaagaacacaacttaggaaaatatcctggggaag 320

                                                                       
Query: 187 tcttagtgtgacttatccagcagcaggaagaagtcagtgggctggacaagggaagacatt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcttagtgtgacttatccagcagcaggaagaagtcagtgggctggacaagggaagacatt 260

                                                                
Query: 247 aagtccacaagagaagggcttctttatgccagagctgagtaagtgcattccta 299
           ||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 259 aagtccacaagagaagggcttccacatgccagagctgagtaagtgcattccta 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)