BAC Information

Click to search

BAC

Clone NameMSMg01-170B06
Chromosome9 (Build37)
Map Location 74,127,150 - 74,127,465
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc13c, Wdr72
Downstream geneNr1h2-ps, LOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170B06.T7 (MSMg01no170_b06.b1)MSMg01-170B06.TJ (MSMg01no170_b06.g1)
ACCAG366761AG366762
length732895
length of high quality
(start - end)
320 (45 - 364)---
definitionCHROMAT_FILE: MSMg01no170_b06.b1 PHD_FILE: MSMg01no170_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:56 2005CHROMAT_FILE: MSMg01no170_b06.g1 PHD_FILE: MSMg01no170_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTGTGAGCCAGAACTCACTGCTGATGAATTATTGCAAAGAAACG
ACATGTCCGAGGGTTACTTTCCCCATCAGACCGAACCTCTAGGTTCACCA
GCAAGGTCGAAATAGCAAGAATGCTCTGGTAGACAGGTGCTTCGCCAACC
TTAATGGATTCCAGGCACTCACCTGGGTATAAGGCTTGAACCAATAAAGA
TCAGAATGGCAAGATGGGCAAGGTACAGGCCTCAAGAGAACAGGTGAGCA
CGCTCTGCAAGGCCTCTGAGCTGTGACCCATATGCAGAGTGGCCCATTTA
TAAACAGTTCTCTTTGGCCGGCCACCTCCGCGTTGGAGAGTAGTGTCAGT
GGTAAATAAGCCTACAGTCTCTGAACTCCACTTGGGAAGTCAACTGTGTC
ATTTTATGTAAAATTAAAAAAAATTTTTTTCCCTTACTCACGGCATTTTA
AAGCTAGCAGCACTTAAGATAGTAACTTTAGGTCTGTTCAAAAATATATT
TCAGGTTCTCCATGCTACCTTGTCCTTCCTACTTTCTGCCTATGAATGAG
GACTGAAGTCAGTGCTGTGTAGCTGTAAAAGCTAGAATGAATGAAGTTTT
AGTTTGAAAAGATTTTAAAAAAATAAAGACAGTATTTAGATTGAACAATA
GAGGAAGTGGTACTCTTGGTATGGCGAAATCA
CTCCCATTGTCGGACAATTNGGAGAGATAACACAAATCCGACGCTGTTTT
CTGTATATTGGGGGTGGGGAGGTGAATTCTCTTTTTTCCCAAAAATCAAC
TACATCTAATTGATGTCTCCCACAGAGTTCTCTGCCTTGGCCTGCCTATT
TCCACACTCTAAATCCTCAAAGTGACACCCGCCTGGTACTGCCCCCGTGT
CACCTGTCCGGTATCAACTTCTTGCTTCGCCTATCCAATCAATCATCCGG
TGCACGCGCCACTATCACATGGAAACAATAAGATCGCTCCCAAGAACTCA
TACTAATCCTCTCACCTGACGGTGAAACAAAAAAGGCGATCGCGACCGGC
GTCCGTCGCAATCAACGAATGGCTAAATAGGTTCAAAACGCGAGGCGGGC
GCGAACAGCACCAGACTCGCAAGGCCACATTACCAACCGTGAAAACGCTG
GGCGAAATAGACACACGCGAACGTAGACTAGCCGGGGTGAACCATGGCAC
GGTGCGTGCCCGTTCATTAGACATTGGATTACGTACCACTGTAGGCGAGC
GTGGACCAATACCGTGTACCCTCTCTATACACTCAGTCAGAACAGAGCTC
AACATGTCCATCTATGGCATCAGCGCTCCTCACACACATATACTTGCCCT
TCCTCGATCTACTCACCTCCTCTCTGGGGCCCAGTCCCNNNNNNNNNNGC
CTGCTTCATTCCCTAANNTTGCNNNNTTAAGCNNNCCCTGCNNTNCGTCA
NCAGAAACNTTTGATTCNNNGTCGNTGACCCAANNTTAANACTCCGGTNT
TNCACNTCNCTAACTGCAGTGGATTGGTTGANTTNNNTCCGGANACNTCT
ANNTANTCGNGACGGGTGCGTCATCTCACNCGGGGTACGCCGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_b06.b1 MSMg01no170_b06.b1 CHROMAT_FILE:
MSMg01no170_b06.b1 PHD_FILE: MSMg01no170_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:56 2005
         (320 letters)



>mm_chr9_74126947_74127666
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacctgtgagccagaactcactgctgatgaattattgcaaagaaacgacatgtc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggaattcacctgtgagccagaactcactgctgatgaattattgcaaagaaacgacatgtc 460

                                                                       
Query: 64  cgagggttactttccccatcagaccgaacctctaggttcaccagcaaggtcgaaatagca 123
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 459 cgagggttactttccccatcagaccggacctctaggttcaccagcaaggtcgaaatagca 400

                                                                       
Query: 124 agaatgctctggtagacaggtgcttcgccaaccttaatggattccaggcactcacctggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agaatgctctggtagacaggtgcttcgccaaccttaatggattccaggcactcacctggg 340

                                                                       
Query: 184 tataaggcttgaaccaataaagatcagaatggcaagatgggcaaggtacaggcctcaaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tataaggcttgaaccaataaagatcagaatggcaagatgggcaaggtacaggcctcaaga 280

                                                                       
Query: 244 gaacaggtgagcacgctctgcaaggcctctgagctgtgacccatatgcagagtggcccat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gaacaggtgagcacgctctgcaaggcctctgagctgtgacccatatgcagagtggcccat 220

                           
Query: 304 ttataaacagttctct 319
           ||||||||||||||||
Sbjct: 219 ttataaacagttctct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)