BAC Information

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BAC

Clone NameMSMg01-171G16
Chromosome9 (Build37)
Map Location 112,367,083 - 112,367,390
singlet/doubletsinglet
Overlap genenone
Upstream geneDclk3, LOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341, LOC620760
Downstream geneLOC100043800, EG622110, LOC100039391, LOC100043801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171G16.T7 (MSMg01no171_g16.b1)MSMg01-171G16.TJ (MSMg01no171_g16.g1)
ACCAG367667AG367668
length796729
length of high quality
(start - end)
312 (103 - 414)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no171_g16.b1 PHD_FILE: MSMg01no171_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:38 2005CHROMAT_FILE: MSMg01no171_g16.g1 PHD_FILE: MSMg01no171_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTACTTTTATACTCCCCAATCAGCCTAAAATCTATAANNNNNN
NNGACTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTATGACAGAGGGATAAAACATCACTCTGAATATCCAT
ATAAAGACACAAGTTCTCAGCCTGAGAGTTCTACTTTCCTGACATTGTCA
TTCCCCGACCTCCTAAAGTCATTACCTTGGGGATTCGGATCTAAGAACAT
GAGTTTGAAGGAACACAAATGTTGAATCCACTGCACAAAAATATGTAGCT
ACAAAATGGGGGAGATGTTCGCAGTCTTTTAGGCAACAGTGGATACATGT
TGATGCTAAAGCAAGTTTTGAAAGCTTGTTAATTCTTTATTTAGAATTCA
CTTTATTGGGTTTGAGCTGGGTTCCCGANACTATTTCCCCAGACTTCAAA
GGAAGTCAATTCTTAAATATCACCAGAAAGAAAAAAAAAAAATCATTCAG
CGAACATAATATATATGGTCTACTTTTAATATTAAGCAAGTCATACATTC
TTTTTCAGCATAAGATGAACATACACATGTGTGCGCTCTTTCTCGCTCTC
TCTCTCTCTTACACACACTCACACATTCTTTATTTTCATTATACAAGGTG
GCATGATGTGACAAAACGACTTATTTTATCAAAATTTGTTTGTTTGTTTC
CGTTTTATCCTTTTTTTTCTTTTCCATCCCATTTCTTCCCACTTTTCCTT
TCCCCTCCTTTTCTTTCCCCTTTATTCTCCCCTTTTATTCTTTTTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGAGCAAGGAAACATGGTTGTAATCCT
AGCACTGGGGTGGTAGAGTGCGATGGGTTACTGGGTTCACTCACCAGTCA
GGCTAGATTACTTAAAGAGTGACTGACTAGCAAAAATCCCTGCCTCTACA
AATGGTGGACAGTCTGAGAAATGACACCTGAAGTCCTCTAGCCTACATAT
ACATCTGAGCATACATATTCACACACACACACACACACACACACACACAC
ACACACACACACACACATTTTTTTTTACACACACCCTGCTCTGTTCCCAT
CTGTGTTTCNCTACCATCATAGACAGNTNCCCANATTGGTATCTATGGGC
GGGAAACACTGACCAACAAAACNGACTCAACTTGAGCTTCGGGAAGCTTT
TATTCTTTGTCCACCCACAGATATCACCTAAGCCTACACTCACCAGGGCT
CTAGAGTCCCGGGATTCATCTGGAGCTGTTCTTTGCTGGTATTCTGCGGT
TGGGCTCATGACGATGCCTCACTTTAGTGGAACCCATAACCGAATTAAAA
TTGGGCAGCCATTACTTCAGAATAATTCGCAACTAATGTCTTTCTTGTTT
GAAAGTGTAAGACATCACATGTTTTTTTTCACTCCTCCATGTTTCTTCCA
TCCCCATAATTTTGTGCGTTCTTGTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_g16.b1 MSMg01no171_g16.b1 CHROMAT_FILE:
MSMg01no171_g16.b1 PHD_FILE: MSMg01no171_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:38 2005
         (312 letters)



>mm_chr9_112366879_112367590
          Length = 712

 Score =  580 bits (300), Expect = e-170
 Identities = 306/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctatgacagagggataaaacatcactctgaatatccatataaagacacaagttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattcctatgacagagggataaaacatcactctgaatatccatataaagacacaagttc 453

                                                                       
Query: 65  tcagcctgagagttctactttcctgacattgtcattccccgacctcctaaagtcattacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tcagcctgagagttctactttcctgacattgtcattccccgacctcctaaagtcattacc 393

                                                                       
Query: 125 ttggggattcggatctaagaacatgagtttgaaggaacacaaatgttgaatccactgcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttggggattcggatctaagaacatgagtttgaaggaacacaaatgttgaatccactgcac 333

                                                                       
Query: 185 aaaaatatgtagctacaaaatgggggagatgttcgcagtcttttaggcaacagtggatac 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 332 aaaaatatgtagctacaaaatgggggagatgttcacagtcttttaggcaacagtggatac 273

                                                                       
Query: 245 atgttgatgctaaagcaagttttgaaagcttgttaattctttatttagaattcactttat 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 272 atgttgatgctaaagcaagttttgaaagcttgtcaattctttatttagaattcactttat 213

                   
Query: 305 tgggtttg 312
           ||||||||
Sbjct: 212 tgggtttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)