BAC Information

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BAC

Clone NameMSMg01-172G14
Chromosome9 (Build37)
Map Location 105,349,796 - 105,350,027
singlet/doubletsinglet
Overlap geneAtp2c1
Upstream geneCpne4, Mrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1
Downstream geneEG434434, LOC664981, Pik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172G14.T7 (MSMg01no172_g14.b1)MSMg01-172G14.TJ (MSMg01no172_g14.g1)
ACCAG368331AG368332
length708721
length of high quality
(start - end)
312 (45 - 356)234 (125 - 358)
definitionCHROMAT_FILE: MSMg01no172_g14.b1 PHD_FILE: MSMg01no172_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:52 2005CHROMAT_FILE: MSMg01no172_g14.g1 PHD_FILE: MSMg01no172_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTAGGAATTAATTATCTGAGTCTGCTCTTTACGTGGCCCTTTGA
AATCATTATAACATGTTACTGCTTCCTCATTACTGAACTAAACAGAGTAT
TTAGCACATGCACATTTTATGTGTATCTTACTTTACTGAAACCTGGTCTT
TGGCTGGGGACATGGTTTGGTGACAGAGTCCTTTCCTTAGGATACATGAG
ACATTTGTAAACACACACACATACACATACACACACCTATGCATGCACTT
GTGTGCACACACATACATATTCATTTGAGGACACACAGATTTGTACATTT
CTGTTTANGTAATTCACAGACAGGGNCCTGCACATGTTCAGCTTCTGTTC
CACTAGAAAGATATTACATGAAACTAATGCACAGGACACTCTGAAACCAC
GCTAACGCTAATGCTAACGTAGGAGTCGGCGCTGGGGGCACCTGGATCAC
TTAGCTGCTAACAGAACCACTTTCTTATTCATCCTAAAAGATCTTGGGAA
GAACTTCAGTAGAAATCTTCAAACAGTAAGTTGTGTCACTGGCCTTTATA
AACCACCAACTTTGTTTTGCTGCGTCTATCAGCACTCACATGTTACATTA
TATTACTTTTTAATACTCTTTTTAAAGAGGCGTGTTGCCTGAGAGAGACC
CTGTGTTN
TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTCTGTTCAATGAATGCCTCAGG
AATTAAATGTAAAAACTAAACCCCACACCCTACAACCAATGATCATCTCT
AAGATTTCTTTTATACTTTCCCATATGGTACTGGGATATATTGGTCAAAA
CTCAATCAGTAAGATACTAATAGTTGATTACTCCACCAGCTTTCCACTTC
CAGGTAACTGAAACAATCTACTTTTTAATCAGTAATTTTTGGTACATACA
GAAATAATTGTTAGATTAATTCTTAAAATAGTAGAAGGAATTTCAAAAAA
TAAGAATTTTTTTATCACCCCCCACCCCTTCATGATTCAATTAATAATAA
TAAATGAATTCATAAATCAATATACCATATTATGCTGTGGCTCCATTGGA
CCCACAATTTTTATTCTACTTTTTTTTTTTTTTGCAATGTTGGCATAAAA
AGGAGTGGGGGAATACTGGAGAATTAAAGTTGGCCTTACCATATGCTAAC
AGTAACCCAAACACATTCCCCAACTTTATTCCACAGGTCATATTCGGTGC
CCCCCCACACACACACACACACCAAAACACATTTTTTAAAACAAAGAGTT
TCGGCTCATGATCTAGCTCCTTCACTGTGTCACAAATACCTTCAAGAGAA
GGCATCTCTTTTCTTCCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_g14.g1 MSMg01no172_g14.g1 CHROMAT_FILE:
MSMg01no172_g14.g1 PHD_FILE: MSMg01no172_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:53 2005
         (234 letters)



>mm_chr9_105349596_105350229
          Length = 634

 Score =  449 bits (232), Expect = e-131
 Identities = 232/232 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaccctacaaccaatgatcatctctaagatttcttttatactttcccatatggtactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaccctacaaccaatgatcatctctaagatttcttttatactttcccatatggtactgg 260

                                                                       
Query: 61  gatatattggtcaaaactcaatcagtaagatactaatagttgattactccaccagctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatatattggtcaaaactcaatcagtaagatactaatagttgattactccaccagctttc 320

                                                                       
Query: 121 cacttccaggtaactgaaacaatctactttttaatcagtaatttttggtacatacagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttccaggtaactgaaacaatctactttttaatcagtaatttttggtacatacagaaa 380

                                                               
Query: 181 taattgttagattaattcttaaaatagtagaaggaatttcaaaaaataagaa 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattgttagattaattcttaaaatagtagaaggaatttcaaaaaataagaa 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)