BAC Information

Click to search

BAC

Clone NameMSMg01-175H24
Chromosome9 (Build37)
Map Location 68,107,236 - 68,107,379
singlet/doubletsinglet
Overlap genenone
Upstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneRora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175H24.T7 (MSMg01no175_h24.b1)MSMg01-175H24.TJ (MSMg01no175_h24.g1)
ACCAG370471AG370472
length698734
length of high quality
(start - end)
---144 (141 - 284)
definitionCHROMAT_FILE: MSMg01no175_h24.b1 PHD_FILE: MSMg01no175_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:35 2005CHROMAT_FILE: MSMg01no175_h24.g1 PHD_FILE: MSMg01no175_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGACATCACTAT
CTCTGATATATCTACACTTTCCTGAAACTACATTCGAAGCTGCGCAAAAC
CGCACTCGAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CCCCCCCCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGGAGTGCC
TGTCCAGTGCCTGCCATGTGCTGGAAACTCACAGCAGACATCTGGTAGAC
CTTATGAAAGCTATATACAGACTGTGGTGGAATACTCTTAACTAATATTC
CTAGCACACCAAAGGGCCTCGGGATGCTTCTAGATGCCTCCTTAAGAAAC
CATGACCCGGCAGTGCTGGGTGGTTCCTACTGGTTTTGTCCTGACTGTGG
GTTACAGTCAATCAGTCCCTTTACTGATTAAGTGTCCCAGACAACTAGAC
TGGATTTGGAATCATCTAGAAATTTGTTTAGGTACACCTGCGGCATGTCT
GTGAGGGAATTTCCACGGGAGATTCCCTCAGCATGGCAAATCAAGGCACT
CTATCCCATGAGCTGAATGCATAAGCAAAAGAAACAGTTGTGTGAAAAGT
CCAAAATTTGTCCCAAGGGACCAAGAAGGGTGCCATATAGTAATACTACG
GTCAATTCAGGAAGGACTACCACGTGCACATCCCTATACCTTCCATGCCA
GAGCCCTCGAGTATAGGAAGTCAACTTTACAAGACACGATGGCAGAAATG
AACAGCCACACCCCGACAGCGCCCGTTTCTAGCCTCCCACCCCCCTTCGT
ACCAGAAACCCCCCGCTGAAAACCCCAGTCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_h24.g1 MSMg01no175_h24.g1 CHROMAT_FILE:
MSMg01no175_h24.g1 PHD_FILE: MSMg01no175_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:35 2005
         (144 letters)



>mm_chr9_68107036_68107579
          Length = 544

 Score =  242 bits (125), Expect = 8e-69
 Identities = 140/145 (96%), Gaps = 2/145 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggtagaccttatgaaagctatatacagactgtggtggaatactcttaactaatattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tctggtagaccttatgaaagctatatacagactgtggtggaatactcttaactaatattc 285

                                                                       
Query: 61  ctagcacaccaaagggcctcgggatgcttctagatgcctccttaag-aaaccatgacccg 119
           ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| |
Sbjct: 284 ctagcacaccaaagggcctcgggatgcttctagatgcctacttaaggaaac-atgacctg 226

                                    
Query: 120 gcagtgctgggtggttcctactggt 144
           ||||||||||| |||||||||||||
Sbjct: 225 gcagtgctgggcggttcctactggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)