BAC Information

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BAC

Clone NameMSMg01-177G01
Chromosome9 (Build37)
Map Location 68,760,926 - 68,761,563
singlet/doubletsinglet
Overlap geneRora
Upstream geneVps13c, LOC100041451, 9530091C08Rik
Downstream geneNarg2, EG665815, EG244913, Anxa2, Foxb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177G01.T7 (MSMg01no177_g01.b1)MSMg01-177G01.TJ (MSMg01no177_g01.g1)
ACCAG371784AG371785
length734724
length of high quality
(start - end)
39 (247 - 285)638 (75 - 712)
definitionCHROMAT_FILE: MSMg01no177_g01.b1 PHD_FILE: MSMg01no177_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:56 2005CHROMAT_FILE: MSMg01no177_g01.g1 PHD_FILE: MSMg01no177_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTTGCGGCCGCAAAAGATGCGATCGGAANNGAAGGNGGANNNNGAN
ATACTGCAGNGGGGGANNNNNCNCNNNANNNNGNNNAAGNNNAAAAGACN
AAGAAGACCCCCCAAGGACAAACNCAGAAGAGCAGCCCAAGCAACCAGCG
CGGGACACCAGCACAAACACAGACGGACGGCCCACCGCNAGGCAGGCACC
AAGCAGGGGCAGCAAGCCACACGCAGGCAAGAAGCACCATTTTTTGTTAT
CCTCATAAGAGCTCAACACAATGCACACTATTATCAGTTCAACTCGAACA
AAGTTTTTTTTTTTTGACGGCGCAGGGCACAGGGAAAAAGACCGAAAGGA
CCCCCCCACCAAGNCACCAGGAAAAGCCAGGGACCCAGGCAGGCAGAACC
CCCAGACCGGAGGAACGCCGAGCGCACAAAACAAACACAGACCAGCGAAC
GGCCCGCCAAGCCCACAGAAGCACAACCAGCAGAGGGCACACGGCACAGA
CCGAGACCCGAGAGCCGGCGCAACAGAGAGCCAGACAACAGAGCGGAGCG
ACACGCACCACCAGCAGAAGCAACACCCAGACCAGAAGAGGCACCCCAAG
GCCAAAAACAAAAGACAGCCCACCCACCGCACAGAGAAAGCCCCGCGCGA
ATCCATAAACCAACAAACCAAGCGCGGGCACCCACGGCCCCCACCAAACG
CAAAAACGCACGAAACCCAGAAANCAACCCCGGG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCCTTGCATCTTAATAACTTCATC
AGGGTGAAGAAGCCTCTGGCCTCCCCAGAGGACTGCTTCTCCTTGATGTC
ATGTTGATTGAATTGTCTCGTTTTACAAAGAAACAAACGGCTTCGTGTTA
GGCTGATTCTCCTTTCGCTCAGATGTACTAAAGGCTTCAAGGGAAGGGCT
CCTTGTAATTACACACTCTGGCATTTCCTTAATGCTGGGATTTAGAGTTT
TAAGCCCAGTGGGCAGAGACCATTACTAATTTGACATCTGGCCTTGTGCC
CTGACCGCTGATGGCTCTGGAGACAGCATCAGAAATCCGGGTAGGTGGTG
AGAGAAATCACAGAGATGAACAGGGGATGCGGCTCCATTCCTGTCCTGTG
AGTGGGATGATCTGCGACAGAGTGTTGAAAACTGAAGCTGAGACAGAAGG
GTGGGGTATGATCTCAAAGATGCAGAGTAAGCATTGTAGGCATCTACGGT
TGACAGGGTACACTGCTGGGGTTCCGAAGGCGTGACTATTGTCACAGGAC
ATGAGGCCCAGGATGCACTAGTCTCATTGACCTGCAAGGGCCTTTATCGG
GGTAGATCTGATATATGGAATACTTTATGTGGGGAAATATGTACAGTGTG
TATACACACACACACAGGAGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_g01.g1 MSMg01no177_g01.g1 CHROMAT_FILE:
MSMg01no177_g01.g1 PHD_FILE: MSMg01no177_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:56 2005
         (638 letters)



>mm_chr9_68760726_68761763
          Length = 1038

 Score = 1156 bits (598), Expect = 0.0
 Identities = 628/638 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctccttgcatcttaataacttcatcagggtgaagaagcctctggcctccccagaggact 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tctccttgcatcttaataacttcatcagggtgaagaagcctctgccctccccagaggact 260

                                                                       
Query: 61  gcttctccttgatgtcatgttgattgaattgtctcgttttacaaagaaacaaacggcttc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gcttctccttgatgtcatgttgattgaattgtcttgttttacaaagaaacaaacggcttc 320

                                                                       
Query: 121 gtgttaggctgattctcctttcgctcagatgtactaaaggcttcaagggaagggctcctt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgttaggctgattctcctttcgctcagatgtactaaaggcttcaagggaagggctcctt 380

                                                                       
Query: 181 gtaattacacactctggcatttccttaatgctgggatttagagttttaagcccagtgggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaattacacactctggcatttccttaatgctgggatttagagttttaagcccagtgggc 440

                                                                       
Query: 241 agagaccattactaatttgacatctggccttgtgccctgaccgctgatggctctggagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagaccattactaatttgacatctggccttgtgccctgaccgctgatggctctggagac 500

                                                                       
Query: 301 agcatcagaaatccgggtaggtggtgagagaaatcacagagatgaacaggggatgcggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcatcagaaatccgggtaggtggtgagagaaatcacagagatgaacaggggatgcggct 560

                                                                       
Query: 361 ccattcctgtcctgtgagtgggatgatctgcgacagagtgttgaaaactgaagctgagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccattcctgtcctgtgagtgggatgatctgcgacagagtgttgaaaactgaagctgagac 620

                                                                       
Query: 421 agaagggtggggtatgatctcaaagatgcagagtaagcattgtaggcatctacggttgac 480
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 621 ggaagggtggggtatgatctcaaagatgcagagtaagcattgtaggcatctgcgggtgac 680

                                                                       
Query: 481 agggtacactgctggggttccgaaggcgtgactattgtcacaggacatgaggcccaggat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 agggtacactgctggggttccgaaggcgtgactattgtcacaggacatgagtcccaggat 740

                                                                       
Query: 541 gcactagtctcattgacctgcaagggcctttatcggggtagatctgatatatggaatact 600
           ||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 741 gcactagtctcattgacctgcaaaggcctttatcagggtagatctgatatatgtaatact 800

                                                 
Query: 601 ttatgtggggaaatatgtacagtgtgtatacacacaca 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttatgtggggaaatatgtacagtgtgtatacacacaca 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)