TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCACTTTGTATACCAGACTGGTCTTGAACTCAGAAATCTGCCTGCCTC
TGCCTCTGCCTCCCGAGTGCTGCCATTAAAGGCATGCATCGCCACAGCTA
GCTATAAATAAATTTTTAAAGAAACAACTTCTGGTTGTAAGTAAGAAAGA
AACACTCAACCTGAGTTACATGGTGAAAAATACCCCACTTTAGTATTGAC
CTGCTTCACTAAGAATTAATACTTATACTAAACATCTAGGTATTTGTATA
CAAAGCCTCAAAGAACAACTTATAGAAATCATTAAAGGGCCAGTGAGGTG
GCTCAGAAGGCAAAGACACTTGCCGCCGAGCCTGGCAAACAGACTCCAGT
ATGTTGTCCTCTCTGCACCACACGTGCTCTGCGTGTGGCACACACACACC
TACACATAAGCGCTCACTTACAGTAACTTCTGTCCCAGAGAATTATCAAA
CTGGTAAGGAGCCTGAGGCTACCAAATTCTATGCTGTGCATATATGTGAC
AGAATCAGATCAGTATGTACTTCACATCAACTCCAAAGCATCCTAGATAC
CCTAAAACCCATGATGAGGCTGCAAATCTTTGCTGTACTTCGTAAATACT
GATCCCAGGAAGCACTTTGTTTTTCATGTTTTAAACTCTCTGGAATCTAA
AACCCTCACTCATAAAN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGCCAACCTTATCTACATACCAAGCTT
CAGACCAGTCAAATCCATATACAGAGATCTCCTCTCAAACAAACAAAACA
AAACAAAACGATGTTTAAGAAGAAAAGTCTGGTCTTAGTTATTGATGCTG
TTGACAGTGCTGGAGATTGACCCAGGAATGTATTCCTGTTAGGAAAGGGT
TCTACTGTTGAGTTAGACTCCCAGCTCCTCATATCCAAAATGACGCTTGC
CTCGTGCTATCTTCTGTACCTCTAGCTTCTTTCCTATGAAATGGACACAA
ATGTGTCCTCCCTTATTATTTGCACTCACCAGAGAAGTGTTGTATGGCCT
TTCCTGGGAGTATGCCCCCCCCATGTGATCACTTGGATGTATGCATATGT
GTATATGTAGGTCCATGTGCATGTATGTGTGTGCATATGGAGGCCAGAAT
TCAGAGTTACGTAAATATCTTGTATCTCCTTCTACTGTTCTCTACCTTTG
TTTGATCATCTTTTGACACCGGGCCCTCTCCCGTATATCTGTGAATCACC
CATTGGCTTTAATTGCCCTAACAAATAGAACTTCCATTACTTCCAATTTA
CCTGCCTCAAATGTAACTAACTTTACACTTTGTCCGCCATTTTTTTTCCT
TCCCTTCCCCCC

Query= MSMg01no178_a19.b1 MSMg01no178_a19.b1 CHROMAT_FILE:
MSMg01no178_a19.b1 PHD_FILE: MSMg01no178_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:45 2005
         (599 letters)



>mm_chr9_31202644_31203642
          Length = 999

 Score = 1007 bits (521), Expect = 0.0
 Identities = 542/549 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtcttgaactcagaaatctgcctgcctctgcctctgcctcccgagtgctgccattaaa 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 549 tggtctcgaactcagaaatctgcctgcctctgcctctgcctcccgagtgctgggattaaa 490

                                                                       
Query: 61  ggcatgcatcgccacagctagctataaataaatttttaaagaaacaacttctggttgtaa 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggcatgcgtcgccacagctagctataaataaatttttaaagaaacaacttctggttgtaa 430

                                                                       
Query: 121 gtaagaaagaaacactcaacctgagttacatggtgaaaaataccccactttagtattgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtaagaaagaaacactcaacctgagttacatggtgaaaaataccccactttagtattgac 370

                                                                       
Query: 181 ctgcttcactaagaattaatacttatactaaacatctaggtatttgtatacaaagcctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctgcttcactaagaattaatacttatactaaacatctaggtatttgtatacaaagcctca 310

                                                                       
Query: 241 aagaacaacttatagaaatcattaaagggccagtgaggtggctcagaaggcaaagacact 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aagaacaacttaaagaaatcattaaagggccagtgaggtggctcagaaggcaaagacact 250

                                                                       
Query: 301 tgccgccgagcctggcaaacagactccagtatgttgtcctctctgcaccacacgtgctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgccgccgagcctggcaaacagactccagtatgttgtcctctctgcaccacacgtgctct 190

                                                                       
Query: 361 gcgtgtggcacacacacacctacacataagcgctcacttacagtaacttctgtcccagag 420
           ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 189 gcgtgtggcacacgcacacctacacataagcgctcacttgcagtaacttctgtcccagag 130

                                                                       
Query: 421 aattatcaaactggtaaggagcctgaggctaccaaattctatgctgtgcatatatgtgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 aattatcaaactggtaaggagcctgaggctaccaaattctatgctgtgcatatatgtgac 70

                                                                       
Query: 481 agaatcagatcagtatgtacttcacatcaactccaaagcatcctagataccctaaaaccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  agaatcagatcagtatgtacttcacatcaactccaaagcatcctagataccctaaaaccc 10

                    
Query: 541 atgatgagg 549
           |||||||||
Sbjct: 9   atgatgagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no178_a19.g1 MSMg01no178_a19.g1 CHROMAT_FILE:
MSMg01no178_a19.g1 PHD_FILE: MSMg01no178_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:45 2005
         (291 letters)



>mm_chr9_31046406_31047096
          Length = 691

 Score =  509 bits (263), Expect = e-148
 Identities = 284/291 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggccaaccttatctacataccaagcttcagaccagtcaaatccatatacagagatctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aggccaaccttatctacataccaagcttcagaccagtcaaatccatatagagagatctcc 260

                                                                       
Query: 61  tctcaaacaaacaaaacaaaacaaaacgatgtttaagaagaaaagtctggtcttagttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcaaacaaacaaaacaaaacaaaacgatgtttaagaagaaaagtctggtcttagttat 320

                                                                       
Query: 121 tgatgctgttgacagtgctggagattgacccaggaatgtattcctgttaggaaagggttc 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tgatgctgttgacagtgctggagattgacccaggaatttattcctgttaggaaagggttc 380

                                                                       
Query: 181 tactgttgagttagactcccagctcctcatatccaaaatgacgcttgcctcgtgctatct 240
           ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| |||
Sbjct: 381 tactgttgagttagactcccagctcctcatatccaaactgatgcttgcctggtgctttct 440

                                                              
Query: 241 tctgtacctctagcttctttcctatgaaatggacacaaatgtgtcctccct 291
           |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 tctgtacctctagcttctttcctatgaaatggacacaaatgtatcctccct 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)