BAC Information

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BAC

Clone NameMSMg01-180P06
Chromosome9 (Build37)
Map Location 55,338,793 - 55,339,408
singlet/doubletsinglet
Overlap geneEtfa
Upstream geneDmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078
Downstream geneLOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180P06.T7 (MSMg01no180_p06.b1)MSMg01-180P06.TJ (MSMg01no180_p06.g1)
ACCAG374281AG374282
length730738
length of high quality
(start - end)		619 (37 - 655)244 (68 - 311)
definitionCHROMAT_FILE: MSMg01no180_p06.b1 PHD_FILE: MSMg01no180_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:19 2005CHROMAT_FILE: MSMg01no180_p06.g1 PHD_FILE: MSMg01no180_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTC
TCCTTCATTTTCTTGATGATGGCTACCCTGATGAGGATGAAGTGAAATCT
AAAGTTTTGATGTGCATTTCTTTTATGGCGAAGGAGGTTGTATATTTTTA
AGAGTACTTGAATGCCACCCCTCACCCCTACAACCCCTGTGTTGAAGGCC
TGGTTCTACTGCATTTGGGAGATGATGGAACTTTTAGGAGATAGGACCTA
TGGCAAGATAGTTGATAGTATACCTCAAAGGAAATATTGAAATGCTCATT
TTTTTCTTCACCCTTTTCTTTCCCTCCCTTCTCTCTGCTTTCTGGATACT
ACAAGATTAGCAATTATATCTTCTCATGTACTTCTATCATGAGCCATGAC
CTCCTAATCTACCACAGGGCCAAAGTGACAAGATGAAATGATTGAAACCA
CGAGCCAAGATAACATACCTCCTTTTGCTCAGGATTTTTTTTTTCACAGT
GACAAAAAAGTAATAAACACACTATTCACAGGTTCATCACAGACCTACTA
TGGTCTCCCTATGCATTCCTCTTATGGACTTTCCCTCGTTTCAAATGCAT
TTATAGTTTATCAGGATCTATTTTGTGGCTCTTATTGTCCAGATTTTATC
TGTTGTAAAGTCTAGGCCAGAGTAATAAAATTTGGGAATTAAAACACAGC
ATAATAAATTTGTTGTTGGGCTCATACCCN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCTATTTTTTAATAGG
GTTATTTGGTTTTTCGGAGTCCAATTCTTGGTTCTTTATATATATTGGAT
ATTAGCCCCCTATCGGATTTAGGATTGGTAAAGATCTTTTCCCAATCTGT
TGGTGGCCATTTTGTCTTATTGACAGTGTCCTTTGCCTTACAGAAACTTT
GCAATTTTATGAGGTCCCATTTGTCGATTCTTGATCTTACAGCACAAGCC
ATTGCTGTTCTGTTTTTGAATCTTTCCCTTGTGCCCATACCTTCGAGGTT
TTTTTTCCCCTCCCCCCCCCCCAAGTTTCAATGTCTATGGTTTTATGTAG
AGTTCCCCCCCCCACAAAAAAAAGAGTTTTGTACGTGGAGATAATAATGT
ATCAATTTGCATTCTTCTACTTGCTAATCCCCAGTTGAGTCATTCACCAT
TTATTGAAAAAGTCTTCCTTTCATTGGATGTCTTTATTTCTTTTGTTTTC
TTTATGTGGCTTTTAGTGTGTGATATTAATTCTGCCCGCGTCTTTTTTTT
CATTTTTCTCCGCCTGCCCGTTATTTTTATTACATCCCTCATTTCTTTCA
TCTTTTTATTTCCGCCCACTACCCGTGTGCCATTTTCCCCCCTCATTTAT
TTCGACATCCTTTCTTTTATCAATTATTACTATTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_p06.b1 MSMg01no180_p06.b1 CHROMAT_FILE:
MSMg01no180_p06.b1 PHD_FILE: MSMg01no180_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:19 2005
         (619 letters)



>mm_chr9_55338589_55339608
          Length = 1020

 Score = 1160 bits (600), Expect = 0.0
 Identities = 612/616 (99%), Gaps = 1/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctctccttcattttcttgatgatggctaccctgatgaggatgaagtgaaatct 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctctcctttattttcttgatgatggctaccctgatgaggatgaagtgaaatct 264

                                                                       
Query: 65  aaagttttgatgtgcatttcttttatggcgaaggaggttgtatatttttaagagtacttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagttttgatgtgcatttcttttatggcgaaggaggttgtatatttttaagagtacttg 324

                                                                       
Query: 125 aatgccacccctcacccctacaacccctgtgttgaaggcctggttctactgcatttggga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgccacccctcacccctacaacccctgtgttgaaggcctggttctactgcatttggga 384

                                                                       
Query: 185 gatgatggaacttttaggagataggacctatggcaagatagttgatagtatacctcaaag 244
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 gatgatggaacttttaggagataggacctatggcaagatagttggtagtatacctcaaag 444

                                                                       
Query: 245 gaaatattgaaatgctcattttttt-cttcacccttttctttccctcccttctctctgct 303
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaatattgaaatgctcattttttttcttcacccttttctttccctcccttctctctgct 504

                                                                       
Query: 304 ttctggatactacaagattagcaattatatcttctcatgtacttctatcatgagccatga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctggatactacaagattagcaattatatcttctcatgtacttctatcatgagccatga 564

                                                                       
Query: 364 cctcctaatctaccacagggccaaagtgacaagatgaaatgattgaaaccacgagccaag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctcctaatctaccacagggccaaagtgacaagatgaaatgattgaaaccacgagccaag 624

                                                                       
Query: 424 ataacatacctccttttgctcaggattttttttttcacagtgacaaaaaagtaataaaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ataacatacctccttttgctcaggattttttttttcacagtgacaaaaaagtaataaaca 684

                                                                       
Query: 484 cactattcacaggttcatcacagacctactatggtctccctatgcattcctcttatggac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cactattcacaggttcatcacagacctactatggtctccctatgcattcctcttatggac 744

                                                                       
Query: 544 tttccctcgtttcaaatgcatttatagtttatcaggatctattttgtggctcttattgtc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttccctcgtttcaaatgcatttatagtttatcaggatctattttgtggctcttattgtc 804

                           
Query: 604 cagattttatctgttg 619
            |||||||||||||||
Sbjct: 805 aagattttatctgttg 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space:   615090
Effective search space used:   615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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