BAC Information

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BAC

Clone NameMSMg01-182C08
Chromosome9 (Build37)
Map Location 112,090,551 - 112,090,998
singlet/doubletsinglet
Overlap geneLOC100039341
Upstream geneLrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac, 4930545L08Rik, Arpp21
Downstream geneLOC620760, LOC100043800, EG622110, LOC100039391, LOC100043801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182C08.T7 (MSMg01no182_c08.b1)MSMg01-182C08.TJ (MSMg01no182_c08.g1)
ACCAG375111AG375112
length7251,080
length of high quality
(start - end)
454 (75 - 528)---
definitionCHROMAT_FILE: MSMg01no182_c08.b1 PHD_FILE: MSMg01no182_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:48 2005CHROMAT_FILE: MSMg01no182_c08.g1 PHD_FILE: MSMg01no182_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGC
GAATTTTAACCTTTCTTAGGGAAATCTCGCACTTTGTATTAAAAACACAC
ACACACACACACACACAAGTTTGTGTGTTTGCTTCAATAAGAATCAAAAT
CACCTACATGGCAGAGGTTTGCCTTTTTTATTTCTAAATGAAAGCCTTTG
TCCAAATTATAGGAGGGTGTGATATCCTTTAAATCTACATCGATGAGTCT
TTTGTGAGAGACCTTCATGCAATATATGAACAGGTTTGGGGTTAATGAGG
CCTTGTCTGTAAAGTTTGAAAGAGGGAGAAGACAGCAGAAAACTTTCACA
CTGGCTCAGCTGAAAGAGCACCCTTCACTTCGCAGGCAGTGTGCAAAGCA
TCCCTAATATCCCCCCCCCCCGGTGAACAATCTCTTCACAGCCCTCCTTC
CTTCCCCGCAGGGACAACTCTGCCAGCTGAGCATTCCGTGTGACAGCAAA
GAATCACTGTCGCAGCAAGCAACAGATTGGCACACTCCGAGCCCCTTGCA
AACAATCCAGGCTCTAATGTACACTTTCTTTTCTCGAAACTCCTACAGGA
GCAGCCACACAGACAGCTTGGATGCCAACAGAGTCTGAATGGTGAAAGTG
TTTGGCAAAATGAATTTGCAATGCTAAGTCTCCTCGTAGGTGCTGTTTTC
CTTCCCCCCTCCCCCTATCACCCCT
TATAGTAATACCCGCTGCCCGCAAGCACCTCCATTTTCTTGTGTTTCGTA
TTTTTGATCCTGCGTTAGTCGCCGTGCGTATTCTAGCATTTATGGTGATA
TTTTTTATCGCCGCATTCATGACCGTGTCCGGTCTACACTTTTAATACAA
TTAGGCGCCCGAACCNGGATACCCCCTTAAGTGTATAAAAACCAGCCCAC
ACTCCACACCCTTACTATTACTCGACTCACACTTCTACGTATAACGACTG
GCAGAGGACTATTAAAGCGCAAAGACGATGCCGACCAATATGTGCGGCGG
GTATTTTTGTTTTTGTGTTATCGCACGGCGCACCAGAAGCTCCGGGTGAG
GCGAGAATATTAAGATTTTATGCGCGTGTATATAATCGCCGTTTACATTA
CGCACGGCCACGATGCGCGCGGTTTTTGCGTGTGGCGGTATCGCTATTAT
GGTCGTTGACACATTGCGCGCGCGACGTGATTAAACGATTGGCGCGCGAT
TTTTCAATAGCCTATTTATTTAGTGATCCGATCAAAAACTCGTTTCGCAT
CCTCTCCTACCGTTATGCAGAACATGCGCTGTGGGTGGAGATATAATAAA
AACACATTCAGCTTGCCGGACGCAGGCTCATTATGTGTGATTGTGCCCGT
GTTGTTCTGGGGTGTAGACACCCGCCCCCCGGGTAAAGACCGTTGTGATG
GGATGGGCGATGTTAACATATATATAACTACCCCCGACTNGCTCTCTTCT
GATAGTTGTTCGCGCGCACACCATTGAGTGTGGTGATGATCGTCACCTTT
CGCCGATATGTGTGTGTGTGCCGCGACCCGTTTAACCACCCCTTCATTCT
ATTTTTCGGCGTGCGGGCGATGCGCATTAAAACATATATATGAGCGTCCG
CGGGTTATAATATATGATAGGTAATAGTTATACGCGTGGGTAGCTTGTGT
AAAANATATACGTCCACGGGGATCTAGATAGCGTCATTTTACTTTGCTAC
TTTTGCAACATAAANTNTTCTCGCAAATAGCGCCCCTGCGCCGATAAGCA
CACGGCCGAGCCAATATATCTCACATCGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_c08.b1 MSMg01no182_c08.b1 CHROMAT_FILE:
MSMg01no182_c08.b1 PHD_FILE: MSMg01no182_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:48 2005
         (454 letters)



>mm_chr9_112090345_112091198
          Length = 854

 Score =  789 bits (408), Expect = 0.0
 Identities = 440/454 (96%), Gaps = 6/454 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcgcactttgtattaaaaacacacacacacacacacacacaagtttgtgtgtttgctt 60
           |||||||||||||||||||||||||||||||||||||      |||||||||||||||||
Sbjct: 207 tctcgcactttgtattaaaaacacacacacacacaca------agtttgtgtgtttgctt 260

                                                                       
Query: 61  caataagaatcaaaatcacctacatggcagaggtttgccttttttatttctaaatgaaag 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 261 caataagaatcaaaatcacctacatggcaaaggtttgccttttttatttctaaatcaaag 320

                                                                       
Query: 121 cctttgtccaaattataggagggtgtgatatcctttaaatctacatcgatgagtcttttg 180
           ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 321 cctttgtccaaattataggagggtgcgatatcctttaaatctacatctatgagtcttttg 380

                                                                       
Query: 181 tgagagaccttcatgcaatatatgaacaggtttggggttaatgaggccttgtctgtaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagagaccttcatgcaatatatgaacaggtttggggttaatgaggccttgtctgtaaag 440

                                                                       
Query: 241 tttgaaagagggagaagacagcagaaaactttcacactggctcagctgaaagagcaccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgaaagagggagaagacagcagaaaactttcacactggctcagctgaaagagcaccct 500

                                                                       
Query: 301 tcacttcgcaggcagtgtgcaaagcatccctaatatcccccccccccggtgaacaatctc 360
           |||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||
Sbjct: 501 tcacttcgcaggcagtgtgcaaagcatccctaatatccccgcttcccggtgaacaatctc 560

                                                                       
Query: 361 ttcacagccctccttccttccccgcagggacaactctgccagctgagcattccgtgtgac 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccacagccctccttccttccccgcagggacaactctgccagctgagcattccgtgtgac 620

                                             
Query: 421 agcaaagaatcactgtcgcagcaagcaacagatt 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 621 agcaaagaatcactgtcgcagcaagcaacagatt 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)