BAC Information

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BAC

Clone NameMSMg01-183L19
Chromosome9 (Build37)
Map Location 66,670,387 - 66,670,670
singlet/doubletsinglet
Overlap geneAph1c
Upstream geneTrip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488
Downstream geneRab8b, Rps27l, Lactb, Tpm1, Tln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183L19.T7 (MSMg01no183_l19.b1)MSMg01-183L19.TJ (MSMg01no183_l19.g1)
ACCAG376234AG376235
length702751
length of high quality
(start - end)
240 (53 - 292)284 (71 - 354)
definitionCHROMAT_FILE: MSMg01no183_l19.b1 PHD_FILE: MSMg01no183_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:50 2005CHROMAT_FILE: MSMg01no183_l19.g1 PHD_FILE: MSMg01no183_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTATATTCCGCAGTNGCGCGGAATTCAGAACTCTTTACAAGAAGAA
CGGTGGTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAAC
CGCATGAATTCAGAACTCTTCAGCTGGGGAACGGTGGTAATGAAGTGTTC
CCACAACACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCT
TCAGCTGGGGAACAGGGTACCCGTAAGTATTTTTTTACAAGGTAAGTCTG
GCCTTGAACTTTCTAATGAAATTCAAGACAGTCTATCAGAAGTAATGGGG
TAANTGCTTTACAAGGTATGTTTGGCCTTGAACTTTCTTTATTGTTACCC
GCCTTTTTGTTCCTTTTCACATGTTATCAAGTGGTTAAGGTAGGGCTGAA
AATTCTGGATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGA
GAGTAGGAGCAAAGAGGAAATATGGTACACAAAATAAGTATACAGGCCTT
TCCACAGGTCTTGAACCCGAGGAAAAGTTTACGTCAGGTAAGAATACCTG
GGGAGAGATTGGAAGGAAGGAGAAGAAAACAGAGAAGAATAAAGATCCAA
TTAGCGTATGTTTTTAGGAGAAGGAGCCCACTCTTTTTTTTTTTTTTTTC
TCCAGCAAGCAGTTCTTATGAATTCTGAATCATAACGACCCCTGCTTTTT
TC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTTGACATTTGATTGACATCAAGAAACAC
TATGATATAAAAAGAATTCCCTTGGTCTTTTTGACTCGGGTAAGTGGTCT
CAGTGTCACACCATTGGCAGCCATCTGTCCTTAGGAACTGTTCTCTTCAG
AATGGCTAGACCTGAAAATTCACCTTAGGTAGGGCTGCAGGCTAATTGAA
AATAAGCTGTGTAGATTTTATACTAATCTCATTGCATATCTCAGGGAACC
TTTTTGAAAACCAAATCCAAGTTGGGATTTTGTCAACCAGGTCCATATTC
TAGAGTATTATTTTGCTACCCACCCTGGACCCCACTTCCAGAAAGATATG
CTTCTTTGACAGTTAACTCAGAGATACTCTCAAAGCTACTTCTGGGCTCT
GGTGGTCAGATTCTGCCACTGCAGCCAGGGGCCCCTCAGAGCTGGTGAGC
AGTCATGGGGTTCCCCTGGCTTTGGTGTCTGCTGTCTGTAGGCCTGGCCC
CTAACTGCTGACATGTCTTTCAGCTTTCATGACACTGGTCGTCATAATGC
TGCACGTGTTCTGGGGTGTTGTGTCCTTTGATGACTGTGCAAATAATACG
TGTTCCACCTTCCTCACGGTTTATCCTGATCCCCCTGTTGTTGCCCTCCC
CTTTTTTTCTTTTTTCCCCGTTTTTGCTGCTTTGTTAATTCCAGACGATT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_l19.g1 MSMg01no183_l19.g1 CHROMAT_FILE:
MSMg01no183_l19.g1 PHD_FILE: MSMg01no183_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:50 2005
         (284 letters)



>mm_chr9_66670187_66670870
          Length = 684

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttgacatttgattgacatcaagaaacactatgatataaaaagaattcccttggtcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ccttgacatttgattgacatcaagaaacactatgatataaaaagaattcccttggtcttt 425

                                                                       
Query: 61  ttgactcgggtaagtggtctcagtgtcacaccattggcagccatctgtccttaggaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttgactcgggtaagtggtctcagtgtcacaccattggcagccatctgtccttaggaactg 365

                                                                       
Query: 121 ttctcttcagaatggctagacctgaaaattcaccttaggtagggctgcaggctaattgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttctcttcagaatggctagacctgaaaattcaccttaggtagggctgcaggctaattgaa 305

                                                                       
Query: 181 aataagctgtgtagattttatactaatctcattgcatatctcagggaacctttttgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aataagctgtgtagattttatactaatctcattgcatatctcagggaacctttttgaaaa 245

                                                       
Query: 241 ccaaatccaagttgggattttgtcaaccaggtccatattctaga 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ccaaatccaagttgggattttgtcaaccaggtccatattctaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)